Gene detail information of Glyur000404s00017751.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G09820.1 | 9.00E-75 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | AIT76559.1 | 0 | bHLH protein [Trifolium repens] |
| Swissprot | tr|E3SXU4|BHLHW_PEA | 0 | Basic helix-loop-helix protein A |
| trEMBL | tr|A0A097J9V6|A0A097J9V6_TRIRP | 0 | BHLH protein {ECO:0000313|EMBL:AIT76559.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00404 | 144706 | 153089 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000404s00017751.1 | PF14215.1 | bHLH-MYC_N | 12 | 174 | 1.50E-43 |
| Glyur000404s00017751.1 | PF00010.21 | HLH | 460 | 506 | 1.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.048 |
| SRR1783600 | control | 0.048 |
| SRR1783602 | moderate drought stress | 0.151 |
| SRR1811619 | moderate drought stress | 0.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.048 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.041 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.287 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.136 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.656 |
| SRR2967015 | Control (Tissue:root) | 2.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.941 |
| SRR9715740 | Leave | 11.988 |
| SRR9715741 | Leave | 9.567 |
| SRR9715739 | Root | 0.434 |
| SRR9715742 | Root | 0.273 |
| SRR9715743 | Root | 0.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.484 |
| SRR8749028 | MeJA induced 9h | 0.220 |
| SRR8749029 | MeJA induced 9h | 0.574 |
| SRR8749030 | Uninduced | 0.274 |
| SRR8749031 | Uninduced | 0.058 |
| SRR8749032 | Uninduced | 0.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.590 |
| SRR8400027 | Control-Root | 0.540 |