Gene detail information of Glyur000405s00021253.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G36930.11.00E-23basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NRXP_004499048.15.35E-91PREDICTED: transcription factor SPATULA-like isoform X1 [Cicer arietinum]
Swissprottr|Q9FUA4|SPT_ARATH1.00E-36Transcription factor SPATULA
trEMBLtr|V7CRW0|V7CRW0_PHAVU2.00E-89Uncharacterized protein {ECO:0000313|EMBL:ESW32859.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004053074733069-


Gene family

Gene familysubfamily
Transcription Factors FamilybHLH


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046983  protein dimerization activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000405s00021253.1PF00010.21HLH1021489.30E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.107
SRR1783600control2.024
SRR1783602moderate drought stress1.272
SRR1811619moderate drought stress1.200

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.344
DRR006520Root Summer glycyrrhizin high producing strain1.527
DRR006521Root Winter glycyrrhizin high producing strain1.541
DRR006522Root Winter glycyrrhizin high producing strain1.097
DRR006523Root Summer glycyrrhizin low producing strain1.608
DRR006524Root Summer glycyrrhizin low producing strain1.454
DRR006525Leaf Summer glycyrrhizin high producing strain2.050
DRR006526Leaf Summer glycyrrhizin high producing strain2.566

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.467
SRR2868004Drought Stress(Tissue:root)4.929
SRR2967015Control (Tissue:root)4.622

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.382
SRR9715740Leave2.732
SRR9715741Leave1.598
SRR9715739Root0.911
SRR9715742Root1.444
SRR9715743Root0.625

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.328
SRR8749028MeJA induced 9h36.623
SRR8749029MeJA induced 9h43.649
SRR8749030Uninduced37.185
SRR8749031Uninduced23.492
SRR8749032Uninduced37.321

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.009
SRR8400027Control-Root4.165

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved