Gene detail

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Gene detail information of Glyur000405s00021254.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45180.1	4.00E-95	RING/U-box superfamily protein
NR	XP_004499047.1	0	PREDICTED: uncharacterized protein LOC101503203 [Cicer arietinum]
Swissprot	tr\|Q7XTV7\|HIP1_ORYSJ	1.00E-93	Probable E3 ubiquitin-protein ligase HIP1
trEMBL	tr\|G7I2E6\|G7I2E6_MEDTR	0	Zinc finger (C3HC4-type RING finger) family protein {ECO:0000313\|EMBL:AES59415.1}

Sequence

Transcript Sequence

>Glyur000405s00021254.2
ATTTTTCATTTTCCTATCTCATTTTTTTTTCCTTCTGATATCATTCATTTCATTCTTCCTCCACCACCCCCACCAACAGCAAGACCCTCTCTTTTCTCCCCCCTTCCATTTCTCACTACCCCTTTCTTCCTCCTTCTCTTTGGTTTTTCCCTACCCAGTTGTGGAAAAAGGGAAAAAGATAAAATCCCTATAAAGAGGAGAGAAAAAAAAGAGCATCCATAAACCAAACATGGGGTGGGGGTGCTTTTCCTTGTTTGCTTGTTTTTTCAGTTAGTCATCCTTTGATTTTCTCATAGATCGGCCTTGTTTCATTTCCATCCGATCAGCTGAGCCTAGTGCATGCCTTGCTGCTCTATTGAGGAATTCCTTTCACATATTTAACTGTATTGAGTTGAGAAACTTGTAGCTTTCTACAATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGTCTGAAGCCTTGGAATTTGATTGTGGGTCTACATCAAGTAATGCTACAGTTGATCAGCATATTTTCGGGAATAATTTGCGGAATCCTACAGAAAACCGAATGCCTGATTATATACTTTCCCCCAGTGATATGAACCCATCTTACATGAATTCCATAAACCATGAATGGCAGAACTTGAGTGGATGGAGCTTAGGTGAGCCAAGTTCCAGTAATACACAGAATGAGGTTAACAACAATGAGCAGAAAAGGGAGCTAGGGTTATCATCTTCAATAAATGCTGGTGCTATAGCTGGTCCAAGACTAGAAGAAAGGCACTTCGAACCAACCAATGCCTTTTCATTGGACAATGTCAATACAAGTCCTATGTATATGTGCAACTCCAATTCTCATTTGGTGTCACAAAATCTCAACCTAAATGCTGGTTTAACAGATAGTGGTGGTGATAATAATAGCTATCATGTGGAACATCCTAACTTGCACAAGTCTAGTGGACCAGTGAATGAGCACATTCCACCGACTATTGGTTCTGGTTCTTTTCTGCTTCCTTCGGGAAGTAACAGCATTTTCGTTGAGGATACTGATGGTAGGCCAGGTTGTTCTCTAGACACCNGCCGTGTATCATGTAAAAGGAAGGCTGTTGAACGAAATGGTGGACAATCTTCAGATGGTGGAAGTTCTAGCTATAGTCAGCATACAGACGGCAGTGCTTGGAATACTCTTCCTGCTACTCAGGATTATGCAGGGAGCAGTTTTAACAGATCTGCACCGGCAGAACAGGTAAATGCAAGACTTGGCCTGAGTATGGGGGATGGAGCCTCTGAAACCGTTCCTGAGTCAAATGTCGCAGGAAGCTCAGACAGCTTCCAGAGAAATTTTCGTTTGAGGATAAATCCTTCAAGCCAACAACAAATTTCTGTTCCTCCCACTACATTCCCAAACGGGAGCATGATCAGGAATTCTACTGTTCCTTCATCCTCTCCAATGTTGCAAAGGTTTCATCCTATTGATAATCCTCTGGACTTGAGGTCAGTACCGCCAGTAGATGCCATGATTCCTCAAAGCCAGCCTCTTCTAATTCATGTTCCTGCTTTACCAAGGAATGTGCAGTCATTCAGGTGGAGTGGTGGTTCGAGCTCAACTAACAACCATTCGTCAAACCCAGTTATGTGTGTAGATAGGGATAANCGGCCACATGAGGAACCAAGCTCAAGAAGTATGCCTAGAAACATTTTAGAACACCCGGTGTTTGTACCTGCAACCAATTTAAGAAACGTGATTCGGAATCCGACTAGACCTTCAAGTAGTGCAAATTTAAGTATTCCAGGAAATGTTGCTTCGTCATCACGGACTGCGTCGAATTCGGCTATCAATCCAACATCTGCCTCCCCATGGGTTTCTCGTCCTAATCCTCAGCAGTATCCTCGCAGGTTATCTGAATATGTTCGTCGGTCCTTGTTTTCTCCTGGTTCTGAAGCTGCTGGAAGTTCAAGCAATAACTATTCTTCCTTGCGTGGTCCTTCCAGTGCATCTGAATCAAGAGGACTGTCATCTGGGGCNAACCCGGGATCATCTTCATGGTTGGAGAGGTCAGCTGATAGTGAATTTGGAATTCCCTATTCATTACGTTCTTTGGCTGTTGCTGGTGAAGGAAGTAGTAGACTTGTATCCGAGCTCCGCAATGTGTTGGGCATCATGCGTCGGGGTGGGAACCTGCGATTTGAGGATGTTATGATCCTCGACCCTTCAGTGTTTTCTGGAATTGCTGATATTCACGATCGACACAGGGATATGCGACTTGATGTTGACAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAACGCATTGGAAATGTGAGTACTGGGTTGAGTGAGGAGACCATAATGAAACTTTTGAAACAGAAGAAATATTCAGTTGAACCGGGTTCTCAGCGCGAGCACGAGTCAGAACCCTGCTGTGTTTGTCAGGAGGAGTATAACGATGGAGACGATATCGGATCATTGGATTGCGGGCACGATTACCATAAGGACTGTATTAAACAGTGGCTAATGCATAAGAACCTGTGTCCCATTTGTAAGACAACGGGCTTGGCTACATGATGAGACACATTTCTCAAAAAAAAATATTCTATATCTTAGAAGATGAAAACATATAGGTCAAGAAAAACTGGCACAATTAGTCAGCAAAATTCTGCTTAATTTGAAGTTGAAGTCTCTGGTGCCTTAGCCGAATTTCTTAATTATCAATTTTTTGTTTATTTGTTGAAAGCCAATGATCTCCCCGGTTAAGGTGACACATGGGATGATTGGTGTTGGATGAAGGAACATTTCTTTAACTCTAGAGCTGATAAGGCTTTGTTTTACATTTCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00405	39651	46572	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000405s00021254.2	PF13639.1	zf-RING_2	662	704	2.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.110
SRR1783600	control	31.283
SRR1783602	moderate drought stress	34.649
SRR1811619	moderate drought stress	33.634

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.988
DRR006520	Root Summer glycyrrhizin high producing strain	28.780
DRR006521	Root Winter glycyrrhizin high producing strain	32.576
DRR006522	Root Winter glycyrrhizin high producing strain	31.365
DRR006523	Root Summer glycyrrhizin low producing strain	37.371
DRR006524	Root Summer glycyrrhizin low producing strain	38.626
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.793
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.479

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	57.236
SRR2868004	Drought Stress(Tissue:root)	64.779
SRR2967015	Control (Tissue:root)	69.990

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	36.162
SRR9715740	Leave	38.058
SRR9715741	Leave	43.076
SRR9715739	Root	18.621
SRR9715742	Root	47.389
SRR9715743	Root	41.157

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	85.303
SRR8749028	MeJA induced 9h	85.363
SRR8749029	MeJA induced 9h	81.192
SRR8749030	Uninduced	53.072
SRR8749031	Uninduced	74.250
SRR8749032	Uninduced	54.494

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	52.005
SRR8400027	Control-Root	51.107