Gene detail information of Glyur000405s00021265.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G36480.20long-chain base1
NRXP_004490625.10PREDICTED: long chain base biosynthesis protein 1-like [Cicer arietinum]
COGYP_001916478.15.00E-542-amino-3-ketobutyrate coenzyme A ligase [Natranaerobius thermophilus JW/NM-WN-LF]
Swissprottr|Q94IB8|LCB1_ARATH0Long chain base biosynthesis protein 1
trEMBLtr|I1M8P8|I1M8P8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G09380.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00405126898135556-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00654SPT EC:2.3.1.50 Sphingolipid metabolism map00600
Sphingolipid signaling pathwaymap04071
Autophagy - yeastmap04138


Gene Ontology

biological_process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000405s00021265.1PF00155.16Aminotran_1_21114692.90E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.564
SRR1783600control15.555
SRR1783602moderate drought stress12.124
SRR1811619moderate drought stress12.050

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.520
DRR006520Root Summer glycyrrhizin high producing strain18.237
DRR006521Root Winter glycyrrhizin high producing strain16.498
DRR006522Root Winter glycyrrhizin high producing strain16.092
DRR006523Root Summer glycyrrhizin low producing strain26.320
DRR006524Root Summer glycyrrhizin low producing strain26.075
DRR006525Leaf Summer glycyrrhizin high producing strain16.285
DRR006526Leaf Summer glycyrrhizin high producing strain16.302

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.427
SRR2868004Drought Stress(Tissue:root)25.626
SRR2967015Control (Tissue:root)21.371

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.972
SRR9715740Leave40.800
SRR9715741Leave56.985
SRR9715739Root7.608
SRR9715742Root17.596
SRR9715743Root15.114

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h68.712
SRR8749028MeJA induced 9h55.159
SRR8749029MeJA induced 9h79.486
SRR8749030Uninduced62.289
SRR8749031Uninduced105.625
SRR8749032Uninduced88.567

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.862
SRR8400027Control-Root23.130

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved