Gene detail information of Glyur000406s00019717.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G52500.17.00E-119MUTM homolog-1
NRXP_004486650.10PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X2 [Cicer arietinum]
COGYP_006874241.15.00E-38Formamidopyrimidine-DNA glycosylase catalytic domain protein [Emticicia oligotrophica DSM 17448]
Swissprottr|O80358|FPG_ARATH3.00E-142Formamidopyrimidine-DNA glycosylase
trEMBLtr|G7II90|G7II90_MEDTR0Formamidopyrimidine-DNA glycosylase {ECO:0000313|EMBL:AES68177.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004063679942981+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10563mutM, fpg EC:3.2.2.23 4.2.99.18 Base excision repair map03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair

GO:0006289  nucleotide-excision repair


molecular_function

GO:0003676  nucleic acid binding

GO:0003684  damaged DNA binding

GO:0003906  DNA-(apurinic or apyrimidinic site) lyase activity

GO:0008270  zinc ion binding

GO:0008534  oxidized purine nucleobase lesion DNA N-glycosylase activity

GO:0016799  hydrolase activity, hydrolyzing N-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000406s00019717.1PF01149.19Fapy_DNA_glyco21321.20E-24
Glyur000406s00019717.1PF06831.9H2TH1462323.70E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.324
SRR1783600control10.198
SRR1783602moderate drought stress18.902
SRR1811619moderate drought stress17.233

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.348
DRR006520Root Summer glycyrrhizin high producing strain13.552
DRR006521Root Winter glycyrrhizin high producing strain11.276
DRR006522Root Winter glycyrrhizin high producing strain9.976
DRR006523Root Summer glycyrrhizin low producing strain10.589
DRR006524Root Summer glycyrrhizin low producing strain9.657
DRR006525Leaf Summer glycyrrhizin high producing strain8.013
DRR006526Leaf Summer glycyrrhizin high producing strain7.976

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.369
SRR2868004Drought Stress(Tissue:root)15.338
SRR2967015Control (Tissue:root)16.778

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.056
SRR9715740Leave14.343
SRR9715741Leave10.127
SRR9715739Root1.469
SRR9715742Root8.867
SRR9715743Root8.265

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h57.593
SRR8749028MeJA induced 9h19.182
SRR8749029MeJA induced 9h43.377
SRR8749030Uninduced7.686
SRR8749031Uninduced8.587
SRR8749032Uninduced9.990

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.485
SRR8400027Control-Root32.889

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved