Gene detail information of Glyur000406s00019719.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G48900.10Signal recognition particle, SRP54 subunit protein
NRXP_007023271.10Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
COGYP_183899.19.00E-112signal recognition particle protein Srp54 [Thermococcus kodakarensis KOD1]
Swissprottr|P49972|SR542_SOLLC0Signal recognition particle 54 kDa protein 2
trEMBLtr|A0A061G8Z1|A0A061G8Z1_THECC0Signal recognition particle, SRP54 subunit protein {ECO:0000313|EMBL:EOY25893.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004065865762639-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03106SRP54, ffh EC:3.6.5.4 Protein export map03060
Bacterial secretion systemmap03070
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0006614  SRP-dependent cotranslational protein targeting to membrane


cellular_component

GO:0048500  signal recognition particle


molecular_function

GO:0003924  GTPase activity

GO:0005525  GTP binding

GO:0008312  7S RNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000406s00019719.1PF02881.14SRP54_N6615.60E-10
Glyur000406s00019719.1PF00448.17SRP54842781.00E-77
Glyur000406s00019719.1PF02978.14SRP_SPB3093414.20E-06
Glyur000406s00019719.1PF02978.14SRP_SPB3513888.80E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.529
SRR1783600control22.602
SRR1783602moderate drought stress20.145
SRR1811619moderate drought stress20.093

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.469
DRR006520Root Summer glycyrrhizin high producing strain28.987
DRR006521Root Winter glycyrrhizin high producing strain22.945
DRR006522Root Winter glycyrrhizin high producing strain22.524
DRR006523Root Summer glycyrrhizin low producing strain38.983
DRR006524Root Summer glycyrrhizin low producing strain37.265
DRR006525Leaf Summer glycyrrhizin high producing strain13.477
DRR006526Leaf Summer glycyrrhizin high producing strain13.761

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.968
SRR2868004Drought Stress(Tissue:root)39.648
SRR2967015Control (Tissue:root)39.295

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.150
SRR9715740Leave23.485
SRR9715741Leave26.892
SRR9715739Root5.441
SRR9715742Root21.853
SRR9715743Root19.286

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h51.974
SRR8749028MeJA induced 9h46.011
SRR8749029MeJA induced 9h46.704
SRR8749030Uninduced25.363
SRR8749031Uninduced36.191
SRR8749032Uninduced28.550

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.006
SRR8400027Control-Root30.705

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved