Gene detail information of Glyur000407s00023563.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40250.1 | 3.00E-72 | RING/U-box superfamily protein |
| NR | XP_003519814.1 | 0 | PREDICTED: RING-H2 finger protein ATL47-like [Glycine max] |
| Swissprot | tr|Q9FL07|ATL46_ARATH | 8.00E-113 | RING-H2 finger protein ATL46 |
| trEMBL | tr|I1JC11|I1JC11_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G03780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00407 | 31756 | 32937 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000407s00023563.1 | PF13639.1 | zf-RING_2 | 157 | 200 | 6.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.617 |
| SRR1783600 | control | 6.682 |
| SRR1783602 | moderate drought stress | 8.457 |
| SRR1811619 | moderate drought stress | 7.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.114 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.880 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.783 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.777 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.451 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.271 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.064 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.079 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.702 |
| SRR2967015 | Control (Tissue:root) | 11.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.018 |
| SRR9715740 | Leave | 5.773 |
| SRR9715741 | Leave | 5.011 |
| SRR9715739 | Root | 5.668 |
| SRR9715742 | Root | 4.615 |
| SRR9715743 | Root | 5.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.743 |
| SRR8749028 | MeJA induced 9h | 2.415 |
| SRR8749029 | MeJA induced 9h | 1.430 |
| SRR8749030 | Uninduced | 1.738 |
| SRR8749031 | Uninduced | 0.881 |
| SRR8749032 | Uninduced | 0.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.650 |
| SRR8400027 | Control-Root | 16.014 |