Gene detail information of Glyur000407s00023565.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G26830.10Threonyl-tRNA synthetase
NRXP_007157476.10hypothetical protein PHAVU_002G072800g [Phaseolus vulgaris]
COGYP_004653556.13.00E-159threonyl-tRNA synthetase [Parachlamydia acanthamoebae UV-7]
Swissprottr|O04630|SYTM_ARATH0Threonine--tRNA ligase, mitochondrial (Precursor)
trEMBLtr|V7CJK2|V7CJK2_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW29470.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004074415752675+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01868TARS, thrS EC:6.1.1.3 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006435  threonyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004829  threonine-tRNA ligase activity

GO:0005524  ATP binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000407s00023565.1PF00587.20tRNA-synt_2b2854471.20E-44
Glyur000407s00023565.1PF03129.15HGTP_anticodon5536421.60E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control57.864
SRR1783600control57.631
SRR1783602moderate drought stress51.462
SRR1811619moderate drought stress49.429

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain70.818
DRR006520Root Summer glycyrrhizin high producing strain70.389
DRR006521Root Winter glycyrrhizin high producing strain31.227
DRR006522Root Winter glycyrrhizin high producing strain30.162
DRR006523Root Summer glycyrrhizin low producing strain57.908
DRR006524Root Summer glycyrrhizin low producing strain57.746
DRR006525Leaf Summer glycyrrhizin high producing strain54.994
DRR006526Leaf Summer glycyrrhizin high producing strain54.888

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)116.586
SRR2868004Drought Stress(Tissue:root)84.847
SRR2967015Control (Tissue:root)80.695

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave56.337
SRR9715740Leave67.542
SRR9715741Leave64.029
SRR9715739Root26.581
SRR9715742Root60.217
SRR9715743Root51.260

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h186.616
SRR8749028MeJA induced 9h115.591
SRR8749029MeJA induced 9h127.612
SRR8749030Uninduced13.030
SRR8749031Uninduced9.911
SRR8749032Uninduced15.518

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root95.521
SRR8400027Control-Root89.197

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved