Gene detail information of Glyur000407s00023571.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G24030.22.00E-169Protein kinase superfamily protein
NRXP_004489876.10PREDICTED: serine/threonine-protein kinase PBS1-like [Cicer arietinum]
COGYP_001958461.11.00E-29hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9FE20|PBS1_ARATH4.00E-93Serine/threonine-protein kinase PBS1
trEMBLtr|G7K2T1|G7K2T1_MEDTR0Serine/Threonine kinase family protein {ECO:0000313|EMBL:AES96257.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00407113928117132+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.2.2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006468  protein phosphorylation

GO:0009966  regulation of signal transduction


molecular_function

GO:0004672  protein kinase activity

GO:0004674  protein serine/threonine kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000407s00023571.1PF00069.20Pkinase683413.40E-50


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.051
SRR1783600control1.935
SRR1783602moderate drought stress3.049
SRR1811619moderate drought stress3.175

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.314
DRR006520Root Summer glycyrrhizin high producing strain2.831
DRR006521Root Winter glycyrrhizin high producing strain0.962
DRR006522Root Winter glycyrrhizin high producing strain0.633
DRR006523Root Summer glycyrrhizin low producing strain1.777
DRR006524Root Summer glycyrrhizin low producing strain1.866
DRR006525Leaf Summer glycyrrhizin high producing strain3.144
DRR006526Leaf Summer glycyrrhizin high producing strain3.466

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.975
SRR2868004Drought Stress(Tissue:root)7.539
SRR2967015Control (Tissue:root)7.321

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.456
SRR9715740Leave7.578
SRR9715741Leave4.658
SRR9715739Root0.530
SRR9715742Root2.249
SRR9715743Root2.802

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.247
SRR8749028MeJA induced 9h1.873
SRR8749029MeJA induced 9h1.163
SRR8749030Uninduced0.973
SRR8749031Uninduced0.538
SRR8749032Uninduced1.123

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.355
SRR8400027Control-Root8.227

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved