Gene detail information of Glyur000409s00019931.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32260.1 | 4.00E-113 | phosphorylcholine cytidylyltransferase |
| NR | XP_004502085.1 | 0 | PREDICTED: choline-phosphate cytidylyltransferase B-like [Cicer arietinum] |
| COG | YP_004672440.1 | 2.00E-20 | hypothetical protein SNE_A20720 [Simkania negevensis Z] |
| Swissprot | tr|F4JJE0|CCT2_ARATH | 2.00E-159 | Choline-phosphate cytidylyltransferase 2 |
| trEMBL | tr|A0A072VAH1|A0A072VAH1_MEDTR | 0 | Choline-phosphate cytidylyltransferase {ECO:0000313|EMBL:KEH35195.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00409 | 38538 | 42824 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00968 | PCYT1 | EC:2.7.7.15 | Glycerophospholipid metabolism | map00564 |
| Phosphonate and phosphinate metabolism | map00440 | |||
| Choline metabolism in cancer | map05231 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000409s00019931.1 | PF01467.21 | CTP_transf_2 | 18 | 146 | 2.00E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.975 |
| SRR1783600 | control | 5.899 |
| SRR1783602 | moderate drought stress | 5.874 |
| SRR1811619 | moderate drought stress | 5.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.804 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.302 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.022 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.575 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.743 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.010 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.225 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.704 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.504 |
| SRR2967015 | Control (Tissue:root) | 5.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.500 |
| SRR9715740 | Leave | 22.169 |
| SRR9715741 | Leave | 21.660 |
| SRR9715739 | Root | 0.892 |
| SRR9715742 | Root | 5.721 |
| SRR9715743 | Root | 5.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.000 |
| SRR8749028 | MeJA induced 9h | 13.521 |
| SRR8749029 | MeJA induced 9h | 8.804 |
| SRR8749030 | Uninduced | 35.019 |
| SRR8749031 | Uninduced | 21.322 |
| SRR8749032 | Uninduced | 13.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.836 |
| SRR8400027 | Control-Root | 9.898 |