Gene detail information of Glyur000409s00019936.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60580.3 | 5.00E-89 | RING/U-box superfamily protein |
| NR | XP_007145974.1 | 0 | hypothetical protein PHAVU_006G002500g [Phaseolus vulgaris] |
| Swissprot | tr|F4JKK0|SUD1_ARATH | 7.00E-08 | Probable E3 ubiquitin ligase SUD1 |
| trEMBL | tr|V7BLR1|V7BLR1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW17968.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00409 | 78360 | 83473 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000409s00019936.1 | PF12906.2 | RINGv | 265 | 312 | 3.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.680 |
| SRR1783600 | control | 11.796 |
| SRR1783602 | moderate drought stress | 11.373 |
| SRR1811619 | moderate drought stress | 11.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.524 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.563 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.941 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.934 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.098 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.173 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.116 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.263 |
| SRR2967015 | Control (Tissue:root) | 12.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.392 |
| SRR9715740 | Leave | 3.630 |
| SRR9715741 | Leave | 1.486 |
| SRR9715739 | Root | 1.533 |
| SRR9715742 | Root | 4.016 |
| SRR9715743 | Root | 3.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.864 |
| SRR8749028 | MeJA induced 9h | 17.609 |
| SRR8749029 | MeJA induced 9h | 9.686 |
| SRR8749030 | Uninduced | 10.514 |
| SRR8749031 | Uninduced | 6.027 |
| SRR8749032 | Uninduced | 4.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.820 |
| SRR8400027 | Control-Root | 16.442 |