Gene detail information of Glyur000409s00019952.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55020.10lipoxygenase 1
NRKEH35160.10seed linoleate 9S-lipoxygenase [Medicago truncatula]
Swissprottr|P09439|LOX2_SOYBN0Seed linoleate 9S-lipoxygenase-2
trEMBLtr|A0A072VAE0|A0A072VAE0_MEDTR0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00409153129159916-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15718LOX1_5 EC:1.13.11.58 Linoleic acid metabolism map00591


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000409s00019952.1PF00305.14Lipoxygenase696672.40E-284


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.000
SRR1783600control0.000
SRR1783602moderate drought stress3.315
SRR1811619moderate drought stress3.349

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.301
DRR006520Root Summer glycyrrhizin high producing strain0.305
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.052
DRR006523Root Summer glycyrrhizin low producing strain1.950
DRR006524Root Summer glycyrrhizin low producing strain1.758
DRR006525Leaf Summer glycyrrhizin high producing strain4.664
DRR006526Leaf Summer glycyrrhizin high producing strain4.481

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.380
SRR2868004Drought Stress(Tissue:root)8.765
SRR2967015Control (Tissue:root)20.834

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave699.118
SRR9715740Leave54.140
SRR9715741Leave177.977
SRR9715739Root0.118
SRR9715742Root17.578
SRR9715743Root14.631

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.206
SRR8749028MeJA induced 9h2.844
SRR8749029MeJA induced 9h1.841
SRR8749030Uninduced0.977
SRR8749031Uninduced0.856
SRR8749032Uninduced1.161

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root40.232
SRR8400027Control-Root1.426

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved