Gene detail information of Glyur000410s00016196.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54380.1 | 9.00E-146 | protein kinase family protein |
| NR | KGN59887.1 | 0 | hypothetical protein Csa_3G851870 [Cucumis sativus] |
| COG | YP_003949705.1 | 2.00E-14 | Ser/Thr kinase family protein [Stigmatella aurantiaca DW4/3-1] |
| Swissprot | tr|Q9LK35|THE1_ARATH | 0 | Receptor-like protein kinase THESEUS 1 (Precursor) |
| trEMBL | tr|A0A0A0LGD9|A0A0A0LGD9_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN59887.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00410 | 91452 | 93995 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.3.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000410s00016196.1 | PF12819.2 | Malectin_like | 38 | 389 | 2.30E-57 |
| Glyur000410s00016196.1 | PF00069.20 | Pkinase | 495 | 656 | 1.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.680 |
| SRR1783600 | control | 10.851 |
| SRR1783602 | moderate drought stress | 3.792 |
| SRR1811619 | moderate drought stress | 3.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.510 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.363 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.395 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.528 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.535 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.796 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.169 |
| SRR2967015 | Control (Tissue:root) | 3.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.701 |
| SRR9715740 | Leave | 0.289 |
| SRR9715741 | Leave | 0.285 |
| SRR9715739 | Root | 6.983 |
| SRR9715742 | Root | 1.839 |
| SRR9715743 | Root | 3.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.718 |
| SRR8749028 | MeJA induced 9h | 2.529 |
| SRR8749029 | MeJA induced 9h | 2.234 |
| SRR8749030 | Uninduced | 0.612 |
| SRR8749031 | Uninduced | 0.033 |
| SRR8749032 | Uninduced | 0.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.603 |
| SRR8400027 | Control-Root | 5.630 |