Gene detail information of Glyur000410s00016197.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G60510.13.00E-136ATP-dependent caseinolytic (Clp) protease/crotonase family protein
NRXP_003521086.10PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like isoform X1 [Glycine max]
COGYP_421924.11.00E-58enoyl-CoA hydratase/carnithine racemase [Magnetospirillum magneticum AMB-1]
Swissprottr|Q5XF59|HIBC4_ARATH2.00E-1683-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial (Precursor)
trEMBLtr|I1JMV6|I1JMV6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G27150.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0041096367101556+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05605HIBCH EC:3.1.2.4 Carbon metabolism map01200
Propanoate metabolismmap00640
Valine, leucine and isoleucine degradationmap00280
beta-Alanine metabolismmap00410


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000410s00016197.1PF00378.15ECH612232.30E-22
Glyur000410s00016197.1PF13766.1ECH_C2703761.40E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.957
SRR1783600control9.082
SRR1783602moderate drought stress7.924
SRR1811619moderate drought stress8.179

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.540
DRR006520Root Summer glycyrrhizin high producing strain12.198
DRR006521Root Winter glycyrrhizin high producing strain2.493
DRR006522Root Winter glycyrrhizin high producing strain2.278
DRR006523Root Summer glycyrrhizin low producing strain8.183
DRR006524Root Summer glycyrrhizin low producing strain8.255
DRR006525Leaf Summer glycyrrhizin high producing strain9.303
DRR006526Leaf Summer glycyrrhizin high producing strain8.919

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.745
SRR2868004Drought Stress(Tissue:root)8.859
SRR2967015Control (Tissue:root)8.715

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.253
SRR9715740Leave9.907
SRR9715741Leave7.968
SRR9715739Root2.195
SRR9715742Root4.669
SRR9715743Root4.715

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.051
SRR8749028MeJA induced 9h3.901
SRR8749029MeJA induced 9h2.011
SRR8749030Uninduced1.231
SRR8749031Uninduced0.163
SRR8749032Uninduced0.566

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.522
SRR8400027Control-Root16.578

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved