Gene detail information of Glyur000413s00015451.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05460.1 | 3.00E-23 | RNI-like superfamily protein |
| NR | XP_004485990.1 | 9.96E-41 | PREDICTED: putative F-box/LRR-repeat protein 23-like [Cicer arietinum] |
| Swissprot | tr|Q9M0U9|SKI19_ARATH | 4.00E-27 | F-box protein SKIP19 |
| trEMBL | tr|A0A072V3U1|A0A072V3U1_MEDTR | 6.00E-37 | F-box/LRR protein {ECO:0000313|EMBL:KEH36694.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00413 | 1303 | 1676 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000413s00015451.1 | PF12937.2 | F-box-like | 20 | 66 | 6.90E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.173 |
| SRR1783600 | control | 11.358 |
| SRR1783602 | moderate drought stress | 18.416 |
| SRR1811619 | moderate drought stress | 17.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.694 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.602 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.671 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.152 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.226 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.159 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.616 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.408 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.464 |
| SRR2967015 | Control (Tissue:root) | 7.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.895 |
| SRR9715740 | Leave | 3.098 |
| SRR9715741 | Leave | 1.542 |
| SRR9715739 | Root | 16.203 |
| SRR9715742 | Root | 4.860 |
| SRR9715743 | Root | 5.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.510 |
| SRR8749028 | MeJA induced 9h | 17.921 |
| SRR8749029 | MeJA induced 9h | 10.023 |
| SRR8749030 | Uninduced | 4.071 |
| SRR8749031 | Uninduced | 2.019 |
| SRR8749032 | Uninduced | 4.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.266 |
| SRR8400027 | Control-Root | 9.849 |