Gene detail information of Glyur000413s00015453.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G21065.10Tetratricopeptide repeat (TPR)-like superfamily protein
NRCBI30968.30unnamed protein product [Vitis vinifera]
Swissprottr|A8MQA3|PP330_ARATH0Pentatricopeptide repeat-containing protein At4g21065
trEMBLtr|K7M147|K7M147_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29225.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00413439318443-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000413s00015453.1PF13041.1PPR_21101586.40E-10
Glyur000413s00015453.1PF13041.1PPR_22122591.20E-09
Glyur000413s00015453.1PF01535.15PPR2873133.50E-05
Glyur000413s00015453.1PF01535.15PPR3153456.80E-08
Glyur000413s00015453.1PF01535.15PPR3513780.053
Glyur000413s00015453.1PF14432.1DYW_deaminase4986102.60E-16
Glyur000413s00015453.1PF13923.1zf-C3HC4_26306592.60E-06
Glyur000413s00015453.1PF13771.1zf-HC5HC2H124213204.80E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.216
SRR1783600control1.908
SRR1783602moderate drought stress0.780
SRR1811619moderate drought stress0.782

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.979
DRR006520Root Summer glycyrrhizin high producing strain0.963
DRR006521Root Winter glycyrrhizin high producing strain0.618
DRR006522Root Winter glycyrrhizin high producing strain0.609
DRR006523Root Summer glycyrrhizin low producing strain0.537
DRR006524Root Summer glycyrrhizin low producing strain0.568
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.231

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.664
SRR2868004Drought Stress(Tissue:root)0.833
SRR2967015Control (Tissue:root)2.558

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.180
SRR9715740Leave0.409
SRR9715741Leave0.668
SRR9715739Root0.007
SRR9715742Root0.245
SRR9715743Root0.119

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.568
SRR8749028MeJA induced 9h1.657
SRR8749029MeJA induced 9h7.446
SRR8749030Uninduced6.354
SRR8749031Uninduced3.470
SRR8749032Uninduced0.897

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.893
SRR8400027Control-Root1.687

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved