Gene detail information of Glyur000413s00015467.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03250.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_004485981.1 | 0 | PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Cicer arietinum] |
| Swissprot | tr|Q9LYW0|Y5325_ARATH | 0 | BTB/POZ domain-containing protein At5g03250 |
| trEMBL | tr|G7IP40|G7IP40_MEDTR | 0 | Phototropic-responsive NPH3 family protein {ECO:0000313|EMBL:AES64125.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00413 | 56797 | 59287 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000413s00015467.1 | PF00651.26 | BTB | 28 | 130 | 3.40E-07 |
| Glyur000413s00015467.1 | PF03000.9 | NPH3 | 212 | 474 | 2.90E-94 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.021 |
| SRR1783600 | control | 0.020 |
| SRR1783602 | moderate drought stress | 0.053 |
| SRR1811619 | moderate drought stress | 0.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.095 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.122 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.024 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.110 |
| SRR2967015 | Control (Tissue:root) | 0.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.236 |
| SRR9715740 | Leave | 0.235 |
| SRR9715741 | Leave | 0.278 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.001 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.136 |
| SRR8749028 | MeJA induced 9h | 0.388 |
| SRR8749029 | MeJA induced 9h | 0.239 |
| SRR8749030 | Uninduced | 0.092 |
| SRR8749031 | Uninduced | 1.826 |
| SRR8749032 | Uninduced | 2.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.083 |
| SRR8400027 | Control-Root | 0.075 |