Gene detail information of Glyur000413s00015469.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G30330.10auxin response factor 6
NRXP_004485979.10PREDICTED: auxin response factor 6-like [Cicer arietinum]
Swissprottr|Q6H6V4|ARFF_ORYSJ0Auxin response factor 6
trEMBLtr|G7IP35|G7IP35_MEDTR0Auxin response factor {ECO:0000256|RuleBase:RU004561}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004138451091552+


Gene family

Gene familysubfamily
Transcription Factors FamilyARF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009725  response to hormone


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0046983  protein dimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000413s00015469.1PF02362.16B31272358.90E-21
Glyur000413s00015469.1PF06507.8Auxin_resp2653291.00E-23
Glyur000413s00015469.1PF02309.11AUX_IAA7198129.10E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.635
SRR1783600control34.490
SRR1783602moderate drought stress27.894
SRR1811619moderate drought stress27.283

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.248
DRR006520Root Summer glycyrrhizin high producing strain29.088
DRR006521Root Winter glycyrrhizin high producing strain10.346
DRR006522Root Winter glycyrrhizin high producing strain10.143
DRR006523Root Summer glycyrrhizin low producing strain29.100
DRR006524Root Summer glycyrrhizin low producing strain29.311
DRR006525Leaf Summer glycyrrhizin high producing strain13.775
DRR006526Leaf Summer glycyrrhizin high producing strain13.747

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.269
SRR2868004Drought Stress(Tissue:root)26.890
SRR2967015Control (Tissue:root)31.606

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.957
SRR9715740Leave34.374
SRR9715741Leave29.393
SRR9715739Root16.955
SRR9715742Root22.759
SRR9715743Root20.505

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.572
SRR8749028MeJA induced 9h22.344
SRR8749029MeJA induced 9h16.274
SRR8749030Uninduced3.161
SRR8749031Uninduced1.289
SRR8749032Uninduced2.947

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root74.499
SRR8400027Control-Root74.672

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved