Gene detail

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Gene detail information of Glyur000413s00015476.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18050.1	0	P-glycoprotein 9
NR	AES64092.2	0	ABC transporter B family-like protein [Medicago truncatula]
COG	YP_629357.1	1.00E-112	ABC transporter permease [Myxococcus xanthus DK 1622]
Swissprot	tr\|Q9M0M2\|AB9B_ARATH	0	ABC transporter B family member 9
trEMBL	tr\|G7ILW5\|G7ILW5_MEDTR	0	ABC transporter B family-like protein {ECO:0000313\|EMBL:AES64092.2}

Sequence

Transcript Sequence

>Glyur000413s00015476.1
ATGGCAAAGGACATTGAGGAGAAGGTGTCTCCTCCATCATCTTCACAACATGAAAGAGAAAACAAAGACAACCAAAAAGTTCCCTTTTACATGCTCTTCACTTTTGCTGATCGATTTGACGTCAACTTGATGATCGTTGGCACGATCTGTGCCATCGCTAATGGATTGTCACAGCCTCTCATGACCGTCATTTTTGGGAAGCTCATCAACACCTTTGGCTCCACCGATATATCCCACATTGTCCAGGAAGTTTCCAAGGTTGCAAAATTATTTGTTTACCTGGCCATTGGGTCTGGAATAGCATCATTTCTACAGGTATCATGTTGGATGGTGACGGGAGAAAGACAAGCTGCTCGAATTCGTGGCTTGTACTTGAAAACCATATTAAAGCAGGACATTGCCTTCTTTGACACTGAAACAACCACCGGAGAGGTTGGGAAGGTTATTCAACTTGCTTCAACTTTTCTTGGTGGCTTTGTGATTGCCTTTATAAAAGGATGGCAACTGGCTATAGTTTTGCTTGCATGTATACCTTGTGTCATCATTGCTGGTGGAATCATGTCCATGATGATGTCTAAAATGTCAAGTCGTGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGAACAAACTGTGGGAGCCATAAGAACAGTTGCATCTTTTACCGGCGAGAAAAAAGCAATAGAAAATTACAATAGCAAGTTAAAAGTTGCCTATACTACAATGGTTCAACAAGGGATGGCCTCAGGGTTAGGAATGGGAGTACTTTTGTTTGTTGTCTTTAGCACCTATGGACTTGCCATGTGGTATGGTTCCAAATTGGTCATTGAGAAAGGATATAATGGTGGAACTGTCATGAATATAATCATAGCTCTTATGACTGGTGGAATGTCACTGGGTCAGACATCACCAAGCCTAAATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAAATGTTTGAGACAATTAAAAGAAAGCCCAAAATTGATGCCTATGACACTAGTGGTGTTGTCATGGAAGACATAAAGGGAGATATTGAACTCAAGGATGTTTACTTTAGATACCCTGCAAGGCCAGATGTGCAGATCTTCGCTGGATTCTCATTGTNTGTTCCCAGTGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGGAAGTCTACTGCAATCAATTTATTGGAAAGATTCTATGATCCTGATGCTGGAGAAGTGCTTATAGATGGGGTGAATTTGAAGAACTTTCAAGTTAAATGGATAAGAGAACAGATTGGTTTGGTTAGTCAAGAACCTATCCTGTTTACCACTACTATCAGAGAGAACATAGCTTATGGGAAAGAAGGTGCAACTGATGAGGAGATCACAACAGCAATAACACTTGCCAATGCCAAAAACTTCATTGACAAGCTGCCTCAGGGCCTTGACACGATGGCAGGGCAGAATGGGACCCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACAAGTGCATTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATTAGAAAAAGTGATGTTAAAAAGGACTACTGTTGTTGTTGCCCACCGTTTGACAACTATTAGAAATGCTGACACCATAGCAGTGGTTCATCAGGGCAAAATCGTGGAGAAAGGAACTCATGATGAGTTAATTGAGGATGNTGATGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGAACAAGACGCTGAAGGTAACCCAAAGCATGAAGCAGATAAGTCAAGTAACAGTTTTAATATAGACAGTCACATGGCTAGATCAATAAGCCAAGGTTCCTCCCAGTCNCATAGCTTTGCTCTTCCTCGTCAAAGTACTGTGCATATGTCTGGAGAAATAGAAGAAGCAGATATTGAGAAAGACTCTANGAAGAAACCAAAGAAGGTTTCTATGAGACGTTTGGCCTACTTGAACAAGCCTGAGGTTCCTGTCATGCTACTTGGATCCATTGCTGCAGCGATAAATGGTGTCGTGTTCCCAATATTTGGCCTCTTGTTTTCCTCAGTCATTACTATGTTTTATGAACCTCCAGAACAGCAGCGGAAAGATTCCAGGTTCTGGTCACTTCTATATGTGGGTTTGGGTTTGGTTACTCTGGTGGTCTTACCACTGCAGAATTACTTCTTTGGGATTGCTGGTGGAAAACTTATANAAAGAATTCGTTCACTGACATTTGAAAAGGTTGTGCACCAAGAAATTAGTTGGTTTGATGACCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACTGACGCTTCAACNGTGAAAAGTCTTGTTGGTGACACCTTAGCCCTCATTGTGCAAAACATATCAACAATAACAGCAGGTCTAGTCATAGCATTCACTGCTAATTGGATTCTTGCTTTTATAATCCTGGCTGTGTCACCCTTGATCCTTATGCAAGGAATCATTCAGATGAAGTTTCTTAAAGGATTTAGTGCAGATGCCAAGGTGAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCAGTTAGTAGCATCAGAACTGTTGCATCTTTTTGTGCAGAATCGAAGGTGATGGATATGTATAGGAAAAAATGTTCAGGGCCAGAAAAGCAAGGTGTTCGGTTGGGGCTTGTAAGTGGTGCAGGATTTGGTTTCTCCTTTTTGGCTCTATATTGCACAAATGCTTTCTGTTTCTACATTGGATCTGTTCTAGTGCAACGCGGGAAAGCAACTTTTGAAGAGGTTTTCAAGGTTTTCTTTAGTTTAACAGTAACAGCAATCGGCATTTCCCAGTCCAGTGCCCTGGCACCAGACACTAACAAGGCCAAAGATTCCACAGCTTCAATATTTGAAATTCTTGACAGCAAACCCATTATTGACTCCAGCAGCAATGAGGGCATAACACTAGAAACAGTTGCTGGTAATATTGAACTTCAACATAGATTTTACAACCCTGGTTCAGGGCTTNTATTACTAGATGGAACGGATATCAAAAAGTTCAGACTGAGCTGGCTGAGGCAGCAAATGGGTCTGGTTGGCCAAGAGCCCATTCTTTTCAACGAGAGCATTCGTGCCAACATAGCTTATGGCAAAGAAGGAGGTGCCACAGAGGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAGGTTCATAAGTTCCCTTCCAAATGGTTATGATACCTCTGTTGGAGAGAGGGGCACACAGTTATCAGGAGGGCAAAAGCAACGCATTGCAATTGCAAGAGCCATGCTGAGAGACCCCAAAATCCTCTTGCTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCAGAGNGTATAGTTCAAGAGGCTCTAGACAATGTCAGTGTGGATAGAACTACTGTGGTGGTAGCTCACCGTCTCACAACAATTAAAGGGGCCGACATTATAGCAGTGATTAAAAATGGGGTGGTTGCTGAAAAGGGGAGACATGATGTGTTGATGAAGATTACTGATGGAGTTTATGCTTCATTAGTAGCTCTTCATTCAAGTGCATCATAA

Protein Sequence

>Glyur000413s00015476.1
MAKDIEEKVSPPSSSQHERENKDNQKVPFYMLFTFADRFDVNLMIVGTICAIANGLSQPLMTVIFGKLINTFGSTDISHIVQEVSKVAKLFVYLAIGSGIASFLQVSCWMVTGERQAARIRGLYLKTILKQDIAFFDTETTTGEVGKVIQLASTFLGGFVIAFIKGWQLAIVLLACIPCVIIAGGIMSMMMSKMSSRGQAAYAEAGNVVEQTVGAIRTVASFTGEKKAIENYNSKLKVAYTTMVQQGMASGLGMGVLLFVVFSTYGLAMWYGSKLVIEKGYNGGTVMNIIIALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVMEDIKGDIELKDVYFRYPARPDVQIFAGFSLXVPSGTTTALVGQSGSGKSTAINLLERFYDPDAGEVLIDGVNLKNFQVKWIREQIGLVSQEPILFTTTIRENIAYGKEGATDEEITTAITLANAKNFIDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKVMLKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGTHDELIEDXDGAYSQLIRLQEGEQDAEGNPKHEADKSSNSFNIDSHMARSISQGSSQSHSFALPRQSTVHMSGEIEEADIEKDSXKKPKKVSMRRLAYLNKPEVPVMLLGSIAAAINGVVFPIFGLLFSSVITMFYEPPEQQRKDSRFWSLLYVGLGLVTLVVLPLQNYFFGIAGGKLIXRIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNISTITAGLVIAFTANWILAFIILAVSPLILMQGIIQMKFLKGFSADAKVKYEEASQVANDAVSSIRTVASFCAESKVMDMYRKKCSGPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQRGKATFEEVFKVFFSLTVTAIGISQSSALAPDTNKAKDSTASIFEILDSKPIIDSSSNEGITLETVAGNIELQHRFYNPGSGLXLLDGTDIKKFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDEIIAAAQAANAHRFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLRDPKILLLDEATSALDAESEXIVQEALDNVSVDRTTVVVAHRLTTIKGADIIAVIKNGVVAEKGRHDVLMKITDGVYASLVALHSSAS

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00413	117655	123826	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05658	ABCB1, CD243	EC:3.6.3.44	ABC transporters	map02010
			Bile secretion	map04976
			MicroRNAs in cancer	map05206

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component GO:0016021 integral component of membrane molecular_function GO:0005524 ATP binding GO:0016887 ATPase activity GO:0042626 ATPase activity, coupled to transmembrane movement of substances "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000413s00015476.1	PF00664.18	ABC_membrane	142	299	1.90E-31
Glyur000413s00015476.1	PF00005.22	ABC_tran	368	514	9.00E-34
Glyur000413s00015476.1	PF00664.18	ABC_membrane	675	944	8.10E-55
Glyur000413s00015476.1	PF00005.22	ABC_tran	999	1117	1.10E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.041
SRR1783600	control	0.041
SRR1783602	moderate drought stress	0.030
SRR1811619	moderate drought stress	0.032

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.091
DRR006520	Root Summer glycyrrhizin high producing strain	0.150
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.154
DRR006524	Root Summer glycyrrhizin low producing strain	0.154
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.012
SRR2868004	Drought Stress(Tissue:root)	0.035
SRR2967015	Control (Tissue:root)	0.043

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.056
SRR9715740	Leave	0.079
SRR9715741	Leave	0.053
SRR9715739	Root	0.000
SRR9715742	Root	0.017
SRR9715743	Root	0.060

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.065
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.011
SRR8749031	Uninduced	0.071
SRR8749032	Uninduced	0.054

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.124
SRR8400027	Control-Root	0.142