Gene detail information of Glyur000413s00015478.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G32520.20serine hydroxymethyltransferase 3
NRNP_001238335.10serine hydroxymethyltransferase 4 [Glycine max]
COGYP_007273081.12.00E-122serine hydroxymethyltransferase [Tepidanaerobacter acetatoxydans Re1]
Swissprottr|Q94JQ3|GLYP3_ARATH0Serine hydroxymethyltransferase 3, chloroplastic (Precursor)
trEMBLtr|C6ZJY9|C6ZJY9_SOYBN0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00413131456135937+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00600glyA, SHMT EC:2.1.2.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0006544  glycine metabolic process

GO:0006563  L-serine metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004372  glycine hydroxymethyltransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000413s00015478.1PF00464.14SHMT824213.00E-162
Glyur000413s00015478.1PF00464.14SHMT4234542.10E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.619
SRR1783600control28.383
SRR1783602moderate drought stress27.708
SRR1811619moderate drought stress27.758

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain47.655
DRR006520Root Summer glycyrrhizin high producing strain47.501
DRR006521Root Winter glycyrrhizin high producing strain26.534
DRR006522Root Winter glycyrrhizin high producing strain25.957
DRR006523Root Summer glycyrrhizin low producing strain40.284
DRR006524Root Summer glycyrrhizin low producing strain40.126
DRR006525Leaf Summer glycyrrhizin high producing strain43.805
DRR006526Leaf Summer glycyrrhizin high producing strain44.095

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)51.093
SRR2868004Drought Stress(Tissue:root)47.926
SRR2967015Control (Tissue:root)40.343

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave60.107
SRR9715740Leave64.744
SRR9715741Leave72.086
SRR9715739Root32.406
SRR9715742Root49.666
SRR9715743Root49.057

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h46.423
SRR8749028MeJA induced 9h37.052
SRR8749029MeJA induced 9h27.720
SRR8749030Uninduced17.947
SRR8749031Uninduced8.485
SRR8749032Uninduced15.423

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root53.966
SRR8400027Control-Root53.072

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved