Gene detail information of Glyur000415s00025769.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57850.12.00E-104D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
NRXP_004488745.10PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Cicer arietinum]
COGYP_847315.16.00E-64class IV aminotransferase [Syntrophobacter fumaroxidans MPOB]
Swissprottr|Q8L493|DAAA_ARATH4.00E-128D-amino-acid transaminase, chloroplastic {ECO:0000303|PubMed:18318836} (Precursor)
trEMBLtr|I3SWY2|I3SWY2_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK44774.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004155227954908+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K18482ADCL EC:4.1.3.38 Folate biosynthesis map00790


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000415s00025769.1PF01063.14Aminotran_4973305.30E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.253
SRR1783600control3.428
SRR1783602moderate drought stress3.028
SRR1811619moderate drought stress2.992

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.715
DRR006520Root Summer glycyrrhizin high producing strain5.632
DRR006521Root Winter glycyrrhizin high producing strain1.811
DRR006522Root Winter glycyrrhizin high producing strain1.671
DRR006523Root Summer glycyrrhizin low producing strain2.073
DRR006524Root Summer glycyrrhizin low producing strain2.030
DRR006525Leaf Summer glycyrrhizin high producing strain2.397
DRR006526Leaf Summer glycyrrhizin high producing strain2.377

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.947
SRR2868004Drought Stress(Tissue:root)27.757
SRR2967015Control (Tissue:root)21.504

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.835
SRR9715740Leave1.646
SRR9715741Leave2.764
SRR9715739Root19.097
SRR9715742Root6.188
SRR9715743Root9.342

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.794
SRR8749028MeJA induced 9h11.663
SRR8749029MeJA induced 9h4.313
SRR8749030Uninduced6.454
SRR8749031Uninduced3.905
SRR8749032Uninduced3.965

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.742
SRR8400027Control-Root9.941

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved