Gene detail information of Glyur000418s00021337.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02150.1 | 2.00E-33 | plastid transcription factor 1 |
| NR | XP_003554917.1 | 8.42E-91 | PREDICTED: transcription factor TCP13-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9S7W5|TCP13_ARATH | 7.00E-46 | Transcription factor TCP13 |
| trEMBL | tr|K7MW90|K7MW90_SOYBN | 3.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G03786.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00418 | 20695 | 21813 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000418s00021337.1 | PF03634.8 | TCP | 70 | 179 | 1.80E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.552 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.083 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.134 |
| SRR2967015 | Control (Tissue:root) | 0.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.915 |
| SRR9715740 | Leave | 28.554 |
| SRR9715741 | Leave | 31.202 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.075 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.060 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.266 |
| SRR8749031 | Uninduced | 0.206 |
| SRR8749032 | Uninduced | 0.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.128 |
| SRR8400027 | Control-Root | 0.066 |