Gene detail information of Glyur000418s00021350.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G15550.14.00E-176Transducin/WD40 repeat-like superfamily protein
NRXP_004489459.10PREDICTED: ribosome biogenesis protein WDR12 homolog [Cicer arietinum]
COGYP_007100486.12.00E-24WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|A8IR43|WDR12_CHLRE2.00E-85Ribosome biogenesis protein WDR12 homolog {ECO:0000255|HAMAP-Rule:MF_03029}
trEMBLtr|V7C1R5|V7C1R5_PHAVU0Ribosome biogenesis protein WDR12 homolog {ECO:0000256|HAMAP-Rule:MF_03029}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004189371598875-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0042254  ribosome biogenesis


molecular_function

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000418s00021350.1PF08154.7NLE16861.50E-21
Glyur000418s00021350.1PF00400.27WD401161440.013
Glyur000418s00021350.1PF00400.27WD401471891.80E-07
Glyur000418s00021350.1PF00400.27WD402062391.90E-07
Glyur000418s00021350.1PF00400.27WD402693053.60E-05
Glyur000418s00021350.1PF00400.27WD403573938.40E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.234
SRR1783600control29.178
SRR1783602moderate drought stress27.545
SRR1811619moderate drought stress27.624

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.428
DRR006520Root Summer glycyrrhizin high producing strain30.218
DRR006521Root Winter glycyrrhizin high producing strain12.163
DRR006522Root Winter glycyrrhizin high producing strain12.397
DRR006523Root Summer glycyrrhizin low producing strain24.018
DRR006524Root Summer glycyrrhizin low producing strain24.265
DRR006525Leaf Summer glycyrrhizin high producing strain6.963
DRR006526Leaf Summer glycyrrhizin high producing strain6.828

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.440
SRR2868004Drought Stress(Tissue:root)30.888
SRR2967015Control (Tissue:root)23.813

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.847
SRR9715740Leave9.849
SRR9715741Leave5.328
SRR9715739Root9.711
SRR9715742Root17.697
SRR9715743Root14.423

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.944
SRR8749028MeJA induced 9h12.975
SRR8749029MeJA induced 9h9.011
SRR8749030Uninduced1.452
SRR8749031Uninduced0.364
SRR8749032Uninduced1.300

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.172
SRR8400027Control-Root22.304

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved