Gene detail information of Glyur000419s00025974.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G21710.17.00E-1298-oxoguanine-DNA glycosylase 1
NRXP_007137445.10hypothetical protein PHAVU_009G127600g [Phaseolus vulgaris]
COGYP_008090017.14.00E-533-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Chthonomonas calidirosea T49]
Swissprottr|Q9FNY7|OGG1_ARATH1.00E-159DNA-(apurinic or apyrimidinic site) lyase
trEMBLtr|V7AV26|V7AV26_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW09439.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004191353022250+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03660OGG1 EC:3.2.2.- 4.2.99.18 Base excision repair map03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair

GO:0006289  nucleotide-excision repair


molecular_function

GO:0003684  damaged DNA binding

GO:0003824  catalytic activity

GO:0008534  oxidized purine nucleobase lesion DNA N-glycosylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000419s00025974.1PF07934.7OGG_N621791.60E-23
Glyur000419s00025974.1PF00730.20HhH-GPD1803181.00E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.964
SRR1783600control11.170
SRR1783602moderate drought stress7.737
SRR1811619moderate drought stress7.754

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.370
DRR006520Root Summer glycyrrhizin high producing strain9.701
DRR006521Root Winter glycyrrhizin high producing strain13.892
DRR006522Root Winter glycyrrhizin high producing strain13.614
DRR006523Root Summer glycyrrhizin low producing strain11.250
DRR006524Root Summer glycyrrhizin low producing strain10.433
DRR006525Leaf Summer glycyrrhizin high producing strain10.948
DRR006526Leaf Summer glycyrrhizin high producing strain10.121

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.933
SRR2868004Drought Stress(Tissue:root)12.709
SRR2967015Control (Tissue:root)14.455

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.254
SRR9715740Leave12.419
SRR9715741Leave11.728
SRR9715739Root11.334
SRR9715742Root8.975
SRR9715743Root8.228

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.950
SRR8749028MeJA induced 9h19.563
SRR8749029MeJA induced 9h11.707
SRR8749030Uninduced5.975
SRR8749031Uninduced4.913
SRR8749032Uninduced6.768

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.818
SRR8400027Control-Root12.175

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved