Gene detail information of Glyur000419s00025990.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21760.1 | 7.00E-161 | F-box protein 7 |
| NR | XP_003523431.1 | 0 | PREDICTED: F-box protein 7-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9XI00|SKI32_ARATH | 0 | F-box protein 7 |
| trEMBL | tr|I1JZ38|I1JZ38_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G42640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00419 | 116129 | 124577 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000419s00025990.1 | PF12937.2 | F-box-like | 63 | 108 | 6.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.800 |
| SRR1783600 | control | 40.235 |
| SRR1783602 | moderate drought stress | 54.487 |
| SRR1811619 | moderate drought stress | 54.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.317 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.710 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 58.542 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 57.101 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 58.440 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 58.553 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.255 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 45.418 |
| SRR2868004 | Drought Stress(Tissue:root) | 65.955 |
| SRR2967015 | Control (Tissue:root) | 75.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 45.250 |
| SRR9715740 | Leave | 58.127 |
| SRR9715741 | Leave | 51.021 |
| SRR9715739 | Root | 32.902 |
| SRR9715742 | Root | 35.739 |
| SRR9715743 | Root | 36.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.979 |
| SRR8749028 | MeJA induced 9h | 33.310 |
| SRR8749029 | MeJA induced 9h | 42.033 |
| SRR8749030 | Uninduced | 35.993 |
| SRR8749031 | Uninduced | 69.415 |
| SRR8749032 | Uninduced | 62.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 45.796 |
| SRR8400027 | Control-Root | 44.936 |