Gene detail information of Glyur000419s00025993.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G48520.10GLU-ADT subunit B
NRXP_003530925.10PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like [Glycine max]
COGYP_007124411.10glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit B [Microcoleus sp. PCC 7113]
Swissprottr|B9SQR9|GATB_RICCO0Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03147} (Precursor)
trEMBLtr|I1KQC8|I1KQC8_SOYBN0Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial {ECO:0000256|HAMAP-Rule:MF_03147}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00419128795135117+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02434gatB, PET112 EC:6.3.5.6 6.3.5.7 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

molecular_function

GO:0016874  ligase activity

GO:0016884  carbon-nitrogen ligase activity, with glutamine as amido-N-donor



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000419s00025993.1PF02934.10GatB_N693063.30E-93
Glyur000419s00025993.1PF02934.10GatB_N3023361.90E-08
Glyur000419s00025993.1PF02637.13GatB_Yqey3745218.40E-50


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.421
SRR1783600control5.359
SRR1783602moderate drought stress5.241
SRR1811619moderate drought stress5.269

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.544
DRR006520Root Summer glycyrrhizin high producing strain9.478
DRR006521Root Winter glycyrrhizin high producing strain4.874
DRR006522Root Winter glycyrrhizin high producing strain4.687
DRR006523Root Summer glycyrrhizin low producing strain9.000
DRR006524Root Summer glycyrrhizin low producing strain8.947
DRR006525Leaf Summer glycyrrhizin high producing strain35.167
DRR006526Leaf Summer glycyrrhizin high producing strain34.516

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.699
SRR2868004Drought Stress(Tissue:root)8.529
SRR2967015Control (Tissue:root)10.589

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.197
SRR9715740Leave53.832
SRR9715741Leave37.271
SRR9715739Root0.727
SRR9715742Root5.495
SRR9715743Root3.552

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.402
SRR8749028MeJA induced 9h13.458
SRR8749029MeJA induced 9h11.648
SRR8749030Uninduced5.961
SRR8749031Uninduced4.599
SRR8749032Uninduced5.059

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.142
SRR8400027Control-Root11.811

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved