Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000420s00021432.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18780.1	0	cellulose synthase family protein
NR	XP_006586375.1	0	PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming]-like [Glycine max]
COG	YP_007095679.1	1.00E-14	glycosyl transferase [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q8LPK5\|CESA8_ARATH	0	Cellulose synthase A catalytic subunit 8 [UDP-forming]
trEMBL	tr\|I1KSF7\|I1KSF7_SOYBN	0	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}

Sequence

Transcript Sequence

>Glyur000420s00021432.1
ATGATGCCATCTGGTTCTGGTGTTCCCCTCTGCAACACTTGTGGGGAACAAGTGGGGCTTCATGAGAATGGGGAGGTGTTTGTGGCTTGTCATGAGTGCAAGTTCCCAATTTGCAAGGACTGTTTTGAGCTTGAAACCAATGAGGGCCATAGGGTCTGCTTGAGGTGTGGCACTCCCTATGAAGAGAGAACAAAGGATGATGATGACATGAAGGTTCACGAAAATCCATCCACAATGGCTTCCCAGGTCAATAACTCTGAGGATGTTGGACTCCATGCTAGACATGTCAGTACAGTGTCCACAGTTGATGGTGAAATAAAGGAAGAATCTGGGAATCCGATCTGGAAAAATAGACTGGAAAGTTGGAAGGGAAAGAATAAAAAGAACAAGAAAAAAAAGGATGCACCTAAGGCTGAAAATGAGGCTTCAGTTCCACAAGAGCAGCAGATGGAAGAAAAACAGTCCACNGAGGCTGCTGCTCTGCCACTTTCAGTACTTATTCCAATATCAAAATCAAAACTGGCACCATACAGAACCGTGATAATCATGCGGCTAATAATCTTGGGTCTTTTCTTCCATTATCGAGTTACAAATCCTGTTCATAGTGCTTATCCTCTGTGGTTGACATCTATCATCTGTGAGATATGGTTTGCATTTTCCTGGGTGTTAGATCAGTTCCCTAAATGGTTCCCCGTCAATAGGCAAACTTTTATTGAGAACCTATCTGCAAGGTTTGAAAAGGAGGGTGAACCCTCTGGACTTGCTGCTGTTGACTTCTTTGTCAGTACAGTCGATCCTTTGAAAGAACCACCATTGATTACAGCTAATACGGTGCTTTCTATCCTTGCGGTTGACTACCCAGTAGATAAAGTATCTTGTTATGTGTCAGATGATGGTGCAGCAATGCTCACATTTGAATCACTTGTGGAGACAGCTGAATTTGCAAGGAAGTGGGTGCCATTTTGCAAAAAGTTTTCAATTGAGCCAAGAGCACCTGAGTTTTACTTCTCACAAAAGATTGACTACCTCAAGGACAAAGTGCAACCTTCTTTTGTGAAGGAACGTAGAGCAATGAAGAGAGACTATGAAGAGTATAAAGTACGAGTTAATGCTATGGTATCTAAGGCTCAGAAAACACCAGAAGAAGGATGGAGTATGCAAGATGGAACACCTTGGCCAGGAAATAATTCGCGTGATCACCCTGGAATGATTCAGGCTTTCCTTGGACACACCGGTGCCCGTGACATTGAAGGAAATGAACTTCCCAGGCTGGTTTATGTTTCTAGAGAGAAAAGACCAGGATACCAACACCACAAGAAAGCTGGTGCTGAAAATGCACTGGTAAACATGAAAGGACTAGATGGCATTCAAGGACCAGTGTATGTGGGAACTGGATGTGTTTTCAATCGACAAGCACTTTACGGTTATAGCCCACCTTCTATGCCCAACTTACCANAATCTTCATGTTGCTGTTGCTGCCCCTCAAAGAAGTCCACCACAGATGCGTCTCTGGTTTATAGAGATGCAAAGAGGGCAGAACTTGAAGCTGCCATTTTTAATCTCAGGGAGATTGACAACTACGATGAGCANGAAAGGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACTTTTGGCTTGTCTACTGTTTTCATTGAATCTACATTAATGGAGAATGGAGGGGTAGCTGAATCTGCAGATCCTTCAATGCTGATCAAGGAGGCCATTCATGTAATTAGCTGTGGATATGAAGAGAAGACTGAATGGGGAAAAGAGATTGGTTGGATTTATGGTTCAGTTACTGAGGATATCTTAACCGGGTTCAAGATGCAGTGCCGAGGATGGAGGTCAATTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGGTCAGCACCTATCAACTTGTCTGATAGGTTGCACCAAGTCCTTCGTTGGGCACTTGGATCAATTGAAATTTTCTTAAGCAGACACTGCCCCCTCTGGTATGGATTTGCAGGAGGCCGTCTCAAGTGGCTGCAGAGAATGGCTTATATAAACACCATTGTCTACCCTTTTACATCCCTTCCTCTTGTTGCCTATTGTACTTTGCCAGCAATTTGCCTTCTCACAGGAAAATTTATCATACCAACGCTTTCCAACATTGCAAGTGTTCTCTTTCTTGGACTTTTCCTCTCCATTATAGTGACCAGTGTGCTCAAGTTGCGTTGGAGTGGTGTTAGCATTGAAGATTTGTGGCGTAATGAGCAGTTCTGGGTGATAGGAGGTGTTTCAGCTCATCTTTTTGCTGTCTTCCAAGGATTACTCAAGATGTTGGCTGGTGTTGATACCAACTTCACTGTCACTGCCAAGGCTGCTGAGGACAGTGAGTTTGGTGAACTTTACATTATCAAATGGACTACTCTCTTGATTCCTCCAACAACACTTATCATTGTTAACATGGTTGGTGTTGTTGCTGGATTCTCTGATGCACTCAATGGAGGGTATGAGTCTTGGGGACCACTCTTTGGGAAGGTTTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTTAAGGGTCTTATGGGTCGCCAAAACCGCACTCCCACCATTGTTGTTCTNTGGTCAGTGTTGCTGGCCTCTGTCTTCTCTCTTGTTTGGGTCAAGATAGACCCATTTGTGAGCAAAGTTGACAGTTCAACCATCTCTGAGGCATGCAATGCTATAGATTGTTGAGTCACTTGAAGGATGCTTGCTTAGCAAGAGTTTTTGGAAATATGTGAAAAAGAGATACATGGGAATGAGATGATTTGATCCATAGCTTGTGCAAATTTCATATATAGCTCAAAAGGATTAGTTCTTTGTTGAGATGTGTTTCCATTTTGAACTAAGATTGGAAAAAATATTAAAGCTTCGGACAAATTCCCTGTTCAAGGGATAAAGCATTGCCCTGAGTATATCAATGTGAAAAACAGTGATTTTTCTGTNCAATAAGAAATTTGTCTAATTTTTTTGTGTGGTTGTTGTTGTTGTTTCCATCACCATGACAATATTGGCTTATGAGTCTGTGAGTTGTTGACCTATCATTTCCCCCCGCATGTATTAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00420	110251	116745	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0016760 cellulose synthase (UDP-forming) activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000420s00021432.1	PF14569.1	zf-UDP	10	63	2.90E-16
Glyur000420s00021432.1	PF03552.9	Cellulose_synt	448	896	1.40E-235

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.683
SRR1783600	control	13.676
SRR1783602	moderate drought stress	12.511
SRR1811619	moderate drought stress	12.420

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.503
DRR006520	Root Summer glycyrrhizin high producing strain	6.700
DRR006521	Root Winter glycyrrhizin high producing strain	0.108
DRR006522	Root Winter glycyrrhizin high producing strain	0.105
DRR006523	Root Summer glycyrrhizin low producing strain	0.704
DRR006524	Root Summer glycyrrhizin low producing strain	0.670
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.527
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.359

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	26.285
SRR2868004	Drought Stress(Tissue:root)	32.681
SRR2967015	Control (Tissue:root)	23.404

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.606
SRR9715740	Leave	2.492
SRR9715741	Leave	0.521
SRR9715739	Root	3.861
SRR9715742	Root	29.300
SRR9715743	Root	26.929

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.020
SRR8749030	Uninduced	0.020
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	72.035
SRR8400027	Control-Root	122.913