Gene detail information of Glyur000421s00024818.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13180.1 | 8.00E-27 | NAC domain containing protein 83 |
| NR | XP_004492996.1 | 2.56E-50 | PREDICTED: NAC transcription factor 25-like [Cicer arietinum] |
| Swissprot | tr|Q39013|NAC2_ARATH | 2.00E-29 | NAC domain-containing protein 2 |
| trEMBL | tr|V7CU58|V7CU58_PHAVU | 9.00E-50 | Uncharacterized protein {ECO:0000313|EMBL:ESW33697.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00421 | 149534 | 151155 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000421s00024818.1 | PF02365.10 | NAM | 16 | 142 | 3.30E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.718 |
| SRR1783600 | control | 0.728 |
| SRR1783602 | moderate drought stress | 1.540 |
| SRR1811619 | moderate drought stress | 1.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.017 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.082 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.420 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.410 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.893 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.683 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.689 |
| SRR2967015 | Control (Tissue:root) | 1.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.407 |
| SRR9715740 | Leave | 2.166 |
| SRR9715741 | Leave | 3.952 |
| SRR9715739 | Root | 1.601 |
| SRR9715742 | Root | 3.767 |
| SRR9715743 | Root | 3.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.648 |
| SRR8400027 | Control-Root | 1.332 |