Gene detail information of Glyur000422s00020635.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G77800.20PHD finger family protein
NRXP_004515666.10PREDICTED: uncharacterized protein LOC101488965 isoform X3 [Cicer arietinum]
Swissprottr|Q9C5X4|ATX1_ARATH8.00E-30Histone-lysine N-methyltransferase ATX1
trEMBLtr|I1KA40|I1KA40_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G11370.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004223557647466-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000422s00020635.1PF13831.1PHD_23093428.20E-11
Glyur000422s00020635.1PF13832.1zf-HC5HC2H_23544751.10E-22
Glyur000422s00020635.1PF13831.1PHD_2104810811.90E-12
Glyur000422s00020635.1PF13832.1zf-HC5HC2H_2110312105.80E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.976
SRR1783600control13.143
SRR1783602moderate drought stress17.714
SRR1811619moderate drought stress17.625

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.630
DRR006520Root Summer glycyrrhizin high producing strain22.551
DRR006521Root Winter glycyrrhizin high producing strain26.872
DRR006522Root Winter glycyrrhizin high producing strain26.400
DRR006523Root Summer glycyrrhizin low producing strain28.505
DRR006524Root Summer glycyrrhizin low producing strain28.501
DRR006525Leaf Summer glycyrrhizin high producing strain27.024
DRR006526Leaf Summer glycyrrhizin high producing strain26.965

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.871
SRR2868004Drought Stress(Tissue:root)39.434
SRR2967015Control (Tissue:root)43.429

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.222
SRR9715740Leave38.780
SRR9715741Leave36.774
SRR9715739Root4.621
SRR9715742Root31.058
SRR9715743Root28.831

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.658
SRR8749028MeJA induced 9h23.840
SRR8749029MeJA induced 9h10.119
SRR8749030Uninduced17.201
SRR8749031Uninduced14.408
SRR8749032Uninduced10.487

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.634
SRR8400027Control-Root30.955

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved