Gene detail information of Glyur000422s00020644.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32410.1 | 5.00E-55 | cellulose synthase 1 |
| NR | KHN28520.1 | 0 | Cellulose synthase A catalytic subunit 1 [UDP-forming] [Glycine soja] |
| Swissprot | tr|O48946|CESA1_ARATH | 1.00E-60 | Cellulose synthase A catalytic subunit 1 [UDP-forming] |
| trEMBL | tr|I1N137|I1N137_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G14750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00422 | 106791 | 109745 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000422s00020644.1 | PF14569.1 | zf-UDP | 30 | 110 | 2.10E-38 |
| Glyur000422s00020644.1 | PF00170.16 | bZIP_1 | 248 | 309 | 5.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.581 |
| SRR1783600 | control | 2.603 |
| SRR1783602 | moderate drought stress | 2.226 |
| SRR1811619 | moderate drought stress | 2.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.124 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.100 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.513 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.215 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.330 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.237 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.178 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.048 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.263 |
| SRR2967015 | Control (Tissue:root) | 24.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 47.844 |
| SRR9715740 | Leave | 75.213 |
| SRR9715741 | Leave | 60.076 |
| SRR9715739 | Root | 0.286 |
| SRR9715742 | Root | 3.422 |
| SRR9715743 | Root | 2.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.564 |
| SRR8749028 | MeJA induced 9h | 21.170 |
| SRR8749029 | MeJA induced 9h | 42.201 |
| SRR8749030 | Uninduced | 9.400 |
| SRR8749031 | Uninduced | 3.579 |
| SRR8749032 | Uninduced | 6.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.934 |
| SRR8400027 | Control-Root | 18.308 |