Gene detail information of Glyur000422s00020645.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G13360.20alanine:glyoxylate aminotransferase
NRXP_006584642.10PREDICTED: enzymatic resistance protein isoform X1 [Glycine max]
COGYP_002362023.13.00E-157class V aminotransferase [Methylocella silvestris BL2]
Swissprottr|Q56YA5|SGAT_ARATH0Serine--glyoxylate aminotransferase
trEMBLtr|C1IGP4|C1IGP4_VIGRA0Alanine:glyoxylate aminotransferase {ECO:0000313|EMBL:ACE63506.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00422115654120602-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00830AGXT EC:2.6.1.44 2.6.1.45 2.6.1.51 Carbon metabolism map01200
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Alanine, aspartate and glutamate metabolismmap00250
Glycine, serine and threonine metabolismmap00260
Peroxisomemap04146


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000422s00020645.1PF00266.14Aminotran_5123248.30E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.106
SRR1783600control0.110
SRR1783602moderate drought stress0.038
SRR1811619moderate drought stress0.038

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.486
DRR006520Root Summer glycyrrhizin high producing strain0.527
DRR006521Root Winter glycyrrhizin high producing strain0.669
DRR006522Root Winter glycyrrhizin high producing strain0.707
DRR006523Root Summer glycyrrhizin low producing strain0.271
DRR006524Root Summer glycyrrhizin low producing strain0.232
DRR006525Leaf Summer glycyrrhizin high producing strain971.682
DRR006526Leaf Summer glycyrrhizin high producing strain966.450

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.075
SRR2868004Drought Stress(Tissue:root)9.180
SRR2967015Control (Tissue:root)1.126

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave840.910
SRR9715740Leave1160.209
SRR9715741Leave765.743
SRR9715739Root0.136
SRR9715742Root1.031
SRR9715743Root0.675

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.107
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.142

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.125
SRR8400027Control-Root1.371

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved