Gene detail information of Glyur000422s00020646.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G13370.10chromatin remodeling 5
NRXP_006575632.10PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Glycine max]
COGYP_004462436.18.00E-70SNF2-like protein [Mahella australiensis 50-1 BON]
Swissprottr|F4IV99|CHR5_ARATH0Protein CHROMATIN REMODELING 5 {ECO:0000303|PubMed:16547115}
trEMBLtr|I1JIZ0|I1JIZ0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G45000.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00422122469140655-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000422s00020646.1PF00385.19Chromo5295831.80E-14
Glyur000422s00020646.1PF00176.18SNF2_N6239093.90E-71
Glyur000422s00020646.1PF00271.26Helicase_C97110503.50E-15
Glyur000422s00020646.1PF13907.1DUF4208155016487.90E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.077
SRR1783600control10.149
SRR1783602moderate drought stress12.851
SRR1811619moderate drought stress12.872

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.773
DRR006520Root Summer glycyrrhizin high producing strain12.625
DRR006521Root Winter glycyrrhizin high producing strain12.044
DRR006522Root Winter glycyrrhizin high producing strain11.937
DRR006523Root Summer glycyrrhizin low producing strain13.778
DRR006524Root Summer glycyrrhizin low producing strain13.981
DRR006525Leaf Summer glycyrrhizin high producing strain7.683
DRR006526Leaf Summer glycyrrhizin high producing strain7.422

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.186
SRR2868004Drought Stress(Tissue:root)22.656
SRR2967015Control (Tissue:root)23.013

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.320
SRR9715740Leave12.502
SRR9715741Leave13.571
SRR9715739Root1.110
SRR9715742Root10.750
SRR9715743Root9.424

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.010
SRR8749028MeJA induced 9h15.399
SRR8749029MeJA induced 9h4.760
SRR8749030Uninduced7.050
SRR8749031Uninduced5.795
SRR8749032Uninduced3.699

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.307
SRR8400027Control-Root17.984

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved