Gene detail

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Gene detail information of Glyur000422s00020650.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20270.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_006602289.1	0	PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3-like [Glycine max]
COG	YP_004775215.1	9.00E-52	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|O65440\|BAME3_ARATH	0	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (Precursor)
trEMBL	tr\|I1N133\|I1N133_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G14680.1}

Sequence

Transcript Sequence

>Glyur000422s00020650.1
ATGGCCACCCCTTTACCCTCTTGCTTCCTCCTCTTCCTCCTTGTGTGCTTCATCACTAGTCCTGCTTCTGTTTCTTCACTCCCTCTTTCCTTGAGAAGCCAAGCTTCTATCTTGGTTTCTATGAAACAAGATTTTGAAGCTGCTAGTGCTAACTCTTCCTTGAGCAGTTGGGACATGTCTAATTACTTGTCCCTTTGTAGTACTTGGTATGGTATTCAGTGTGACCAAAGTAACAGTTNTGTGGTGTCACTTGACATTTCCAATTTAAATGTTTCTGGGTCACTCTCACCTTCCATCACAGGACTCTCTAGCCTTGTCAGTGTGTCAATCCAGGGAAATGGCCTTTATGGGGAGTTTCCAGGTGATGATATTCACAGGCTATCAAGGCTGAGATTCCTCAACATATCAAACAACATGTTCAGTAGGAACTTGAGTTCTTGGAGATTCTCCAAGTTGGAGGAGCTTGAGGTGCTTGATGCTTACAACAATGACTTCAATGGCTCACTCCCTCAGGGTGTCACTGAGCTCCCAAAGCTCAAGCACTTGAATTTTGGAGGGAACTACTTCTCTGGGAAGATCCCTCCAAGATATGGAAACATGGGGCAGCTCAACTTTCTGTCCCTTGCAGGGAATGATTTGAGTGGCTTCATACCTATTGAGCTTGGAAATCTCACTAACCTCACCCATCTTTACTTGGGATACTTCAACCAATTTGGTGGTGGAATCCCACCTCAGTTTGGGAAGTTGAACAATTTGGTTCATCTAGACCTTGCAAACTGTGGCTTGAAAGGTTCAATTCCAGCTGAGTTGGGAAAACTCTCCAAGTTAGACACACTCTTTTTGCAAACCAATCAGCTCAGTGGTACAATCCCACCCCAGCTGGGAAACTTGAGTAGCTTAAAAGCTCTTGATCTATCACTCAATAAGCTAACAGGAGACATCCCAAATGAGTTCTCAGGCCTTCATGAGCTTACCCTCTTGAACCTCTTCATCAACAGGTTCCATGGAGAGATTCCTGGTTTCATTGCTGAGTTGCCTAAATTGGAGGTGCTGAAGCTTTGGAGGAACAACTTCACTGGGGTGATTCCTCCAAGGCTTGGCCAGAATGGCAAGTTGACTGAGCTTGACCTGTCAACAAATAAGCTCACTGGGTTGGTGCCAAAGTCTCTATGCCTTGGAAAGGGGCTGAGGATTTTGATCTTGCTAAACAACTTTCTGTTTGGATCTTTGCCTTCTGCTGATCTTGGTCAATGCCACACACTCCAAAGAGTTCGTCTTGGTCAAAACTACTTGACTGGTCCACTGCCACATGGATTTCTCTATTTGCCTGAGCTTTCTCTTTTGGAACTACAGAACAATTATCTCAGTGGTGTGCTTCCACAGGGAACAAGCAACACAACCTCCAAACTTGGACAGTTGAATCTATCAAACAACCGCTTATCAGGGTCTCTTCCAACCTCAATTGGAAATTTTCCCAACTTACAAATCCTGCTTCTTAGTGGAAATAGATTCTCAGGAGCAATCCCACCAGATATAGGGAGATTGAAGAGTATCCTCAAGTTGGATATGAGTAGCAACAACTTTTCAGGTACTATTCCTCCTGAGATCGGTAACTGTGCCTTACTCACCTATTTGGATTTGAGCCAAAACCAACTATCAGGTCCCATCCCAGTTCAAGTTTCTCACATTCATATATTGAACTACCTTAATGTCTCATGGAACCACCTAAACCAAAGTCTTCCAAAGGAACTTGGGGCCATGAAGGGCTTAACTTCAGCAGATTTCTCTCACAACAACTTCTCAGGTTCAATACCTGAGGGGGGACAGTTCTCAATCTTCAATTCTACATCCTTTGTTGGTAACCCTCAGCTATGTGGATATGACTTCAATCCATGCCACCTTTCTTCAACAGCAGCATTGGAATCTCAACAAAAAGGCAGTGCAAAATCTTGTATCCCTGGGAAGTTTAAGTTCCTTTTTGCATTGGCGTTATTGGGGTGCTCATTGGTGTTTGCAACCTTAGCCATAATCAAGAGTAGAAAATCAAGGAGGAACTCCAATTCATGGAAGCTCACAGCATTCCAGAAGCTGGAATATGGAAGTGAAGACATCATAGGGTGCATAAAAGAGAACAATGTCATAGGAAGAGGTGGATCTGGTGTTGTGTATAGAGGAACCATGCCAAATGGAGAGGAAGTGGCAGTGAAGAAACTCTTGGGGAATATCAACAAATTAGGATCTTCTCATCATGATAATGGCTTCTCTGCAGAAATAAGGACATTGGGTAGAATCAGGCACAGGTACATTGTGAGGTTGCTAGCATTTTGTTCAAACAAAGAGACCAATTTACTTGTTTATGATTACATGCCAAATGGAAGCCTTGGTGGAGTCTTGCATGGGAAGAGGGGTGAGTTTCTCAAGTGGGACACTAGGCTGAAAATAGCTACAGAAGCTGCAAAGGGACTTTGTTATTTGCACCATGATTGTTCCCCTCTGATAATCCACAGGGATGTCAAGTCAAACAACATATTATTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCATGCAAGATAATGGGGCATCGGAGTGCATGTCTTCCATTGCTGGTTCTTATGGCTACATAGCTCCAGAATATGCATACACATTGAAAGTTGATGAGAAAAGTGATGTTTATAGCTTTGGAGTGGTGCTGCTAGAACTCGTAACGGGGAAAAGGCCAGTGGGGGATTTTGAGGAAGAAGGGTTAGACATTGTTCAATGGGCCAAGATGCAAACCAATTGGGACAAAGAGATGGTGGTGAAGATCCTTGATGAGAGGCTGCGTTTTGATCACATTCCTTTAGAGGAAGCAANGCAGGTGTTTTTTGTGGCCATGTTATGTGTTCATGAACACAGCGTGGAGCGACCAACCATGAGGGAAGTTGTTGAAATGCTTGCACAAGCAAAGCAACCAAACACATTTCAAATGCAGTGTGATCTAGAAAAGCAAAAATAGAAAGAAAAAAAAAGGGGGGGGGGTTGGGTCTATAGTATATTCTATA

Protein Sequence

>Glyur000422s00020650.1
MATPLPSCFLLFLLVCFITSPASVSSLPLSLRSQASILVSMKQDFEAASANSSLSSWDMSNYLSLCSTWYGIQCDQSNSXVVSLDISNLNVSGSLSPSITGLSSLVSVSIQGNGLYGEFPGDDIHRLSRLRFLNISNNMFSRNLSSWRFSKLEELEVLDAYNNDFNGSLPQGVTELPKLKHLNFGGNYFSGKIPPRYGNMGQLNFLSLAGNDLSGFIPIELGNLTNLTHLYLGYFNQFGGGIPPQFGKLNNLVHLDLANCGLKGSIPAELGKLSKLDTLFLQTNQLSGTIPPQLGNLSSLKALDLSLNKLTGDIPNEFSGLHELTLLNLFINRFHGEIPGFIAELPKLEVLKLWRNNFTGVIPPRLGQNGKLTELDLSTNKLTGLVPKSLCLGKGLRILILLNNFLFGSLPSADLGQCHTLQRVRLGQNYLTGPLPHGFLYLPELSLLELQNNYLSGVLPQGTSNTTSKLGQLNLSNNRLSGSLPTSIGNFPNLQILLLSGNRFSGAIPPDIGRLKSILKLDMSSNNFSGTIPPEIGNCALLTYLDLSQNQLSGPIPVQVSHIHILNYLNVSWNHLNQSLPKELGAMKGLTSADFSHNNFSGSIPEGGQFSIFNSTSFVGNPQLCGYDFNPCHLSSTAALESQQKGSAKSCIPGKFKFLFALALLGCSLVFATLAIIKSRKSRRNSNSWKLTAFQKLEYGSEDIIGCIKENNVIGRGGSGVVYRGTMPNGEEVAVKKLLGNINKLGSSHHDNGFSAEIRTLGRIRHRYIVRLLAFCSNKETNLLVYDYMPNGSLGGVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFMQDNGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGKRPVGDFEEEGLDIVQWAKMQTNWDKEMVVKILDERLRFDHIPLEEAXQVFFVAMLCVHEHSVERPTMREVVEMLAQAKQPNTFQMQCDLEKQK

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00422	147751	151807	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000422s00020650.1	PF08263.7	LRRNT_2	33	75	0.00013
Glyur000422s00020650.1	PF00560.28	LRR_1	129	152	0.46
Glyur000422s00020650.1	PF00560.28	LRR_1	251	273	0.16
Glyur000422s00020650.1	PF00560.28	LRR_1	299	321	0.2
Glyur000422s00020650.1	PF13504.1	LRR_7	370	385	2.8
Glyur000422s00020650.1	PF12799.2	LRR_4	469	505	2.30E-06
Glyur000422s00020650.1	PF00560.28	LRR_1	520	539	0.85
Glyur000422s00020650.1	PF00560.28	LRR_1	542	558	0.85
Glyur000422s00020650.1	PF00069.20	Pkinase	710	983	2.70E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.332
SRR1783600	control	1.397
SRR1783602	moderate drought stress	0.957
SRR1811619	moderate drought stress	0.938

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.444
DRR006520	Root Summer glycyrrhizin high producing strain	4.331
DRR006521	Root Winter glycyrrhizin high producing strain	0.036
DRR006522	Root Winter glycyrrhizin high producing strain	0.067
DRR006523	Root Summer glycyrrhizin low producing strain	0.973
DRR006524	Root Summer glycyrrhizin low producing strain	0.975
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.970
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.935

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.992
SRR2868004	Drought Stress(Tissue:root)	8.268
SRR2967015	Control (Tissue:root)	11.049

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.776
SRR9715740	Leave	0.156
SRR9715741	Leave	0.185
SRR9715739	Root	0.332
SRR9715742	Root	1.173
SRR9715743	Root	0.611

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	4.479
SRR8400027	Control-Root	9.431