Gene detail information of Glyur000423s00024435.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32700.1 | 3.00E-72 | PLATZ transcription factor family protein |
| NR | XP_003540084.1 | 1.57E-143 | PREDICTED: uncharacterized protein LOC100810757 [Glycine max] |
| Swissprot | tr|P0CB19|Y3081_ARATH | 4.00E-07 | Uncharacterized protein At3g50808 |
| trEMBL | tr|I1LP57|I1LP57_SOYBN | 6.00E-144 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G01890.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00423 | 56431 | 59349 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PLATZ |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000423s00024435.1 | PF04640.9 | PLATZ | 80 | 151 | 1.00E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.174 |
| SRR1783600 | control | 25.420 |
| SRR1783602 | moderate drought stress | 39.393 |
| SRR1811619 | moderate drought stress | 38.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 75.497 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 74.566 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 61.004 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 59.107 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 129.013 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 131.041 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.626 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 39.873 |
| SRR2868004 | Drought Stress(Tissue:root) | 74.308 |
| SRR2967015 | Control (Tissue:root) | 89.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 40.125 |
| SRR9715740 | Leave | 75.341 |
| SRR9715741 | Leave | 68.177 |
| SRR9715739 | Root | 7.514 |
| SRR9715742 | Root | 13.834 |
| SRR9715743 | Root | 12.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.351 |
| SRR8749028 | MeJA induced 9h | 17.680 |
| SRR8749029 | MeJA induced 9h | 11.443 |
| SRR8749030 | Uninduced | 5.643 |
| SRR8749031 | Uninduced | 4.558 |
| SRR8749032 | Uninduced | 8.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 38.051 |
| SRR8400027 | Control-Root | 30.356 |