Gene detail information of Glyur000423s00024436.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75340.2 | 3.00E-39 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| NR | XP_004505582.1 | 4.83E-180 | PREDICTED: zinc finger CCCH domain-containing protein 16-like [Cicer arietinum] |
| Swissprot | tr|Q5Z807|C3H46_ORYSJ | 1.00E-47 | Zinc finger CCCH domain-containing protein 46 |
| trEMBL | tr|K7LSG8|K7LSG8_SOYBN | 3.00E-154 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G01905.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00423 | 67835 | 74681 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000423s00024436.1 | PF00642.19 | zf-CCCH | 2 | 24 | 9.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.873 |
| SRR1783600 | control | 19.886 |
| SRR1783602 | moderate drought stress | 20.315 |
| SRR1811619 | moderate drought stress | 19.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.446 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.509 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.554 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.990 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.953 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.111 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.160 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.507 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.633 |
| SRR2967015 | Control (Tissue:root) | 20.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.028 |
| SRR9715740 | Leave | 13.257 |
| SRR9715741 | Leave | 14.130 |
| SRR9715739 | Root | 3.636 |
| SRR9715742 | Root | 10.860 |
| SRR9715743 | Root | 10.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.987 |
| SRR8749028 | MeJA induced 9h | 18.856 |
| SRR8749029 | MeJA induced 9h | 19.057 |
| SRR8749030 | Uninduced | 12.333 |
| SRR8749031 | Uninduced | 9.809 |
| SRR8749032 | Uninduced | 10.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.462 |
| SRR8400027 | Control-Root | 19.641 |