Gene detail information of Glyur000424s00026890.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13930.10Chalcone and stilbene synthase family protein
NRXP_004493096.10PREDICTED: chalcone synthase-like [Cicer arietinum]
COGYP_680369.17.00E-47naringenin-chalcone synthase [Cytophaga hutchinsonii ATCC 33406]
Swissprottr|Q9XJ57|CHS2_CITSI0Chalcone synthase 2
trEMBLtr|I1N828|I1N828_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G27930.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0042447736729+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00660CHS EC:2.3.1.74 Flavonoid biosynthesis map00941
Circadian rhythm - plantmap04712


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016746  transferase activity, transferring acyl groups

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000424s00026890.1PF00195.14Chal_sti_synt_N32282.10E-124
Glyur000424s00026890.1PF02797.10Chal_sti_synt_C2383885.40E-75


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1659.965
SRR1783600control1665.781
SRR1783602moderate drought stress876.251
SRR1811619moderate drought stress873.461

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain337.912
DRR006520Root Summer glycyrrhizin high producing strain334.550
DRR006521Root Winter glycyrrhizin high producing strain19.532
DRR006522Root Winter glycyrrhizin high producing strain18.684
DRR006523Root Summer glycyrrhizin low producing strain61.026
DRR006524Root Summer glycyrrhizin low producing strain60.412
DRR006525Leaf Summer glycyrrhizin high producing strain59.372
DRR006526Leaf Summer glycyrrhizin high producing strain58.528

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)76.566
SRR2868004Drought Stress(Tissue:root)22.698
SRR2967015Control (Tissue:root)8.687

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.721
SRR9715740Leave25.620
SRR9715741Leave7.032
SRR9715739Root1366.172
SRR9715742Root1499.283
SRR9715743Root1445.097

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root419.045
SRR8400027Control-Root502.926

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved