Gene detail information of Glyur000425s00021399.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G22620.1 | 0 | Rhamnogalacturonate lyase family protein |
| NR | XP_006572991.1 | 0 | PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max] |
| trEMBL | tr|I1J4Y6|I1J4Y6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G02560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00425 | 73508 | 79696 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | PL4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000425s00021399.1 | PF06045.6 | Rhamnogal_lyase | 25 | 225 | 2.20E-72 |
| Glyur000425s00021399.1 | PF14686.1 | fn3_3 | 358 | 454 | 2.90E-28 |
| Glyur000425s00021399.1 | PF14683.1 | CBM-like | 464 | 653 | 2.70E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.774 |
| SRR1783600 | control | 0.697 |
| SRR1783602 | moderate drought stress | 1.302 |
| SRR1811619 | moderate drought stress | 1.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.727 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.974 |
| SRR2967015 | Control (Tissue:root) | 3.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.034 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.053 |
| SRR9715742 | Root | 2.422 |
| SRR9715743 | Root | 2.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.015 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.748 |
| SRR8400027 | Control-Root | 19.830 |