Gene detail information of Glyur000425s00021401.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G37970.14.00E-77cinnamyl alcohol dehydrogenase 6
NRCDP01602.10unnamed protein product [Coffea canephora]
COGYP_005036923.13.00E-83putative dehydrogenase [Bacteriovorax marinus SJ]
Swissprottr|Q9ZRF1|MTDH_FRAAN8.00E-138Probable mannitol dehydrogenase
trEMBLtr|A0A068TZX3|A0A068TZX3_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01602.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004258838898497+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00083E1.1.1.195 EC:1.1.1.195 Phenylpropanoid biosynthesis map00940


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0008270  zinc ion binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000425s00021401.1PF08240.7ADH_N291133.40E-15
Glyur000425s00021401.1PF00107.21ADH_zinc_N1792481.50E-07
Glyur000425s00021401.1PF08240.7ADH_N3064193.90E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.628
SRR1783600control1.696
SRR1783602moderate drought stress1.702
SRR1811619moderate drought stress1.923

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.082
DRR006520Root Summer glycyrrhizin high producing strain0.080
DRR006521Root Winter glycyrrhizin high producing strain0.588
DRR006522Root Winter glycyrrhizin high producing strain0.655
DRR006523Root Summer glycyrrhizin low producing strain0.112
DRR006524Root Summer glycyrrhizin low producing strain0.121
DRR006525Leaf Summer glycyrrhizin high producing strain7.950
DRR006526Leaf Summer glycyrrhizin high producing strain7.968

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)80.595
SRR2868004Drought Stress(Tissue:root)167.338
SRR2967015Control (Tissue:root)57.027

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.661
SRR9715740Leave10.552
SRR9715741Leave58.710
SRR9715739Root4.373
SRR9715742Root2.826
SRR9715743Root3.375

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h127.372
SRR8749028MeJA induced 9h188.280
SRR8749029MeJA induced 9h248.569
SRR8749030Uninduced1264.387
SRR8749031Uninduced1247.978
SRR8749032Uninduced922.904

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.619
SRR8400027Control-Root12.567

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved