Gene detail

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Gene detail information of Glyur000425s00021405.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37980.1	2.00E-117	elicitor-activated gene 3-1
NR	XP_007158345.1	0	hypothetical protein PHAVU_002G144800g [Phaseolus vulgaris]
COG	YP_003799841.1	4.00E-111	alcohol dehydrogenase [Candidatus Nitrospira defluvii]
Swissprot	tr\|Q9ZRF1\|MTDH_FRAAN	3.00E-177	Probable mannitol dehydrogenase
trEMBL	tr\|V7CJP0\|V7CJP0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30339.1}

Sequence

Transcript Sequence

>Glyur000425s00021405.1
ATGGCAACACAACCCGAACTTGAGCATCCTAGGAAGGCCTTTGGTTGGGCAGCAAGAGATCCTTCTGGTTTCCTCTCCCCTTTCAATTTCTCCAGAAGGGAAACAAGTGAGAAAGATGTAGCACTCAAAGTGTTGTACTGTGGGATATGTCACTCTGACCTTCATAAGGCTAAGAACGATTGGGGCGGTACCACCTATCCACTAGTCCCCGGGCATGAGATTGTTGGTGTAGTGACAGAGGTGGGGAGCAAAGTAAAAAAGTTCAAAGTTGGGGACAGAGTGGGTGTGGGATGCTTGATTGATTCGTGTCACACGTGTCAAAATTGTGCCAATAATCTTGAAAATTACTGCCCAAGATTCACTCTCACAGATGGTGGCAAATATAGTGATGGAACCACCACATATGGAGGTTATTCTGACTCAATGGTTTCAGATGAGCACTTTGTGTTTCGTATCCCTGATGGCTTACCTCTTGATGTTGCTGCTCCTCTCCTTTGTGCTGGGATCACAGTGTATAGCCCTCTTAGATATTTTGGGCTTGACAAGCCCAATTTGAATGTGGGTGTTGTTGGGCTCGGTGGGCTGGGCCATATGGCTGTGAAGTTTGCCAAAGCTTTTGGAGCTAATGTGACGGCTGCAACAGGCACTTTGGATGGCATTATTGACACAGTTTCAGCTGTTCATCCTCTTTTACCTTTGATTGGTCTATTGAAGTCTCATGGAAAGCTTGTAATGGTTGGTGCACCAGAGAAGCCTTTGGATCTCCCTATCTTTCCTTTACTTCAGGGGAGGAAGATAGTAGCTGGTAGTTTAATCGGAGGGATAAAAGAGACCCAAGAGATGATTGATTTTGCAGCNGAACACAATGTAAAACCTGACATTGAGGTCATTCCAGTTGATTATGTCAACACAGCAATGGAGCGACTCGTTAAAGCAGACGTGAAATATAGGTTCGTGATTGACATTGGAAACACACTGAAACCATGCCCTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00425	100881	102820	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00083	E1.1.1.195	EC:1.1.1.195	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0008270 zinc ion binding GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000425s00021405.1	PF08240.7	ADH_N	38	151	1.40E-28
Glyur000425s00021405.1	PF00107.21	ADH_zinc_N	214	286	4.20E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.153
SRR1811619	moderate drought stress	0.147

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.367
SRR2868004	Drought Stress(Tissue:root)	3.302
SRR2967015	Control (Tissue:root)	0.049

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.025
SRR9715741	Leave	0.665
SRR9715739	Root	0.129
SRR9715742	Root	0.283
SRR9715743	Root	0.107

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.046
SRR8749028	MeJA induced 9h	0.226
SRR8749029	MeJA induced 9h	0.119
SRR8749030	Uninduced	0.662
SRR8749031	Uninduced	0.252
SRR8749032	Uninduced	0.535

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.221
SRR8400027	Control-Root	0.411