Gene detail information of Glyur000425s00021407.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65590.1 | 8.00E-39 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_007158346.1 | 6.16E-149 | hypothetical protein PHAVU_002G144900g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LSL6|DOF57_ARATH | 2.00E-55 | Dof zinc finger protein DOF5.7 |
| trEMBL | tr|V7CM55|V7CM55_PHAVU | 2.00E-149 | Uncharacterized protein {ECO:0000313|EMBL:ESW30340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00425 | 129595 | 130939 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000425s00021407.1 | PF02701.10 | zf-Dof | 43 | 103 | 3.00E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.509 |
| SRR1783600 | control | 1.538 |
| SRR1783602 | moderate drought stress | 2.972 |
| SRR1811619 | moderate drought stress | 3.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.087 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.085 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.829 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.678 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.199 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.904 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.826 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.873 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.568 |
| SRR2967015 | Control (Tissue:root) | 3.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.662 |
| SRR9715740 | Leave | 0.662 |
| SRR9715741 | Leave | 0.483 |
| SRR9715739 | Root | 0.708 |
| SRR9715742 | Root | 3.483 |
| SRR9715743 | Root | 2.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.088 |
| SRR8749029 | MeJA induced 9h | 0.062 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.019 |
| SRR8400027 | Control-Root | 7.406 |