Gene detail information of Glyur000426s00022723.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30100.1 | 0 | nine-cis-epoxycarotenoid dioxygenase 5 |
| NR | ACU86971.1 | 0 | 9-cis-epoxycarotenoid dioxygenase [Caragana korshinskii] |
| COG | YP_001866345.1 | 3.00E-91 | carotenoid oxygenase [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9M6E8|NCED1_PHAVU | 0 | 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic (Precursor) |
| trEMBL | tr|C8CEB0|C8CEB0_9FABA | 0 | 9-cis-epoxycarotenoid dioxygenase {ECO:0000313|EMBL:ACU86971.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00426 | 73896 | 75725 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09840 | NCED | EC:1.13.11.51 | Carotenoid biosynthesis | map00906 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000426s00022723.1 | PF03055.10 | RPE65 | 134 | 601 | 5.20E-129 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.136 |
| SRR1783600 | control | 5.469 |
| SRR1783602 | moderate drought stress | 4.886 |
| SRR1811619 | moderate drought stress | 4.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 280.972 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 246.617 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.495 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.595 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 104.195 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 103.778 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 230.839 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 256.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.270 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.112 |
| SRR2967015 | Control (Tissue:root) | 42.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 87.155 |
| SRR9715740 | Leave | 28.623 |
| SRR9715741 | Leave | 43.140 |
| SRR9715739 | Root | 20.355 |
| SRR9715742 | Root | 71.361 |
| SRR9715743 | Root | 60.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.308 |
| SRR8749028 | MeJA induced 9h | 22.772 |
| SRR8749029 | MeJA induced 9h | 8.706 |
| SRR8749030 | Uninduced | 3.419 |
| SRR8749031 | Uninduced | 2.999 |
| SRR8749032 | Uninduced | 9.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 36.493 |
| SRR8400027 | Control-Root | 30.884 |