Gene detail information of Glyur000426s00022729.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14400.1 | 7.00E-165 | ubiquitin-specific protease 25 |
| NR | XP_007149229.1 | 0 | hypothetical protein PHAVU_005G052400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FPS2|UBP25_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 25 |
| trEMBL | tr|V7BW07|V7BW07_PHAVU | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00426 | 125147 | 131595 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000426s00022729.1 | PF00443.24 | UCH | 22 | 329 | 3.20E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.537 |
| SRR1783600 | control | 17.372 |
| SRR1783602 | moderate drought stress | 20.927 |
| SRR1811619 | moderate drought stress | 21.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.409 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.850 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.428 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.679 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.586 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.519 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.484 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.634 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.009 |
| SRR2967015 | Control (Tissue:root) | 25.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.351 |
| SRR9715740 | Leave | 19.244 |
| SRR9715741 | Leave | 18.311 |
| SRR9715739 | Root | 3.431 |
| SRR9715742 | Root | 20.604 |
| SRR9715743 | Root | 17.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.912 |
| SRR8749028 | MeJA induced 9h | 23.099 |
| SRR8749029 | MeJA induced 9h | 12.412 |
| SRR8749030 | Uninduced | 20.556 |
| SRR8749031 | Uninduced | 14.364 |
| SRR8749032 | Uninduced | 15.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.310 |
| SRR8400027 | Control-Root | 25.607 |