Gene detail

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Gene detail information of Glyur000427s00033836.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01260.2	8.00E-37	Carbohydrate-binding-like fold
NR	XP_003516949.1	6.74E-177	PREDICTED: ribonuclease E/G-like protein, chloroplastic-like [Glycine max]
COG	YP_004407263.1	1.00E-10	alpha amylase domain-containing protein [Verrucosispora maris AB-18-032]
Swissprot	tr\|Q6ZY51\|PWD_ARATH	7.00E-10	Phosphoglucan, water dikinase, chloroplastic (Precursor)
trEMBL	tr\|I1J7A3\|I1J7A3_SOYBN	3.00E-177	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G28520.1}

Sequence

Transcript Sequence

>Glyur000427s00033836.1
GAAACATTACTTTACTTTGTTTAATTCTCGACCGAGCACGTATGAGTCTAGGGATGATTGTATATGAATGCCCCACCAATATAAAAGGACCCCACATTCACATCGCTGTAAACACTCTCACCACCAGCATCCGTTAGATTCTGCATCTTTACCCACTAACCAACAAAACCCAATCAAACAAAGAAGAAACCAGAAACCACCACTGTGTTTCATCATCCACGAAACTTTCCCGTGTGTGTGGCAGATAGATCAAACTTCCACCACTGNGTAAAGGGTGATGAAAGCCTTCACCACCTTTCGTTCTAACTCCATCATCACTGAGAGACTACTAGGATCTTCTTCTCCTGGAGTTGCAGCTCCTGTTTCTAACAGACCCCAATTCTTCTGCTTCTCCTTTAACTACTCCAGAAATGACAAAAAAGGCCCCAACTTTTGGCTCCTGAAACTTGTTCAAAACAAGGGTATTTACCCAGTTCATGTTGAGCCATCAAGAACCCAGGGTTACTTGGAAACCATAGAGCCTCAAGCTCAACAAAATGATCAAACAAATGAATCAAAGTATGTTCGTGTAGCATTTCAGTTACAAAAAAATTGTGAATTTGGGGAACAGTTTCTAATAGTTGGAGATAATCCCGTGCTTGGTTCGTGGGAGCCTTCGGATGCATTACCAATGACATGGTCAGATGGGCATATATGGACTGTGGAGCTGGATATGCCTGCTGGAAAGTCAATCCAGTACAAGTTCATAATGAAAGGAAAAGGGGGTAATATTATCTGGCAGCCAGGCTCAGATCGAATCGTCAACACTTGGGAAACCGTGAACCGGATAATTGTTTGCGAGGATTGGGAGAATGCTGAACTTCAGAAAATAATAGAGGAAGATGAAGCTTCTCAACCAAATGAGGAACCCCAGCAGGTTGTATCAGAAGTGTCAACTTNTACTGAAATTTTGGATAGTCTTCAAGTGGAACTGGAGTCCAATGTATCCAAAATATCGGGCATTGAAGATACCCGAATTCATGCGGAGGAGAAACCAGTTGCTGAACCAGTACTACAACAAATAACTGGTGATACTAATAGTATTTCTTCATCAATGGAGAAGCCAATGGCTATTATTGCAGAAAATATAGGGCCCTCAGAGGATCTCATGGAAGATACGAGTAGTGAAAAGAATGAAAGGGATGCAATTCAACAGAGTGAAGAATCTGCAGATGGTCCCAGCATTCATGATGTAATATATGATCTTGAATACAATGGAAACGCCGCACCACTGAAGAATCAGGATAGGACAACTGTGGAGGACAGTTTATTCGATTTTGAAGGAGGTCCTGTACTTGTACCTGGCTTAATATCCCTAACTGAAGAAGCTGGTCCAGGTGAAGTTGAAGAAAAGAGTGCAATGGACCCTCCAATTGAAGCCTTTGAAACTCGGGATCAGAAGGATCTACCAGAGTTCAGTAAGGAGCAAGAATCCAATGAGGGCACACCCCACGAAGACATAAGTGCAACAATCAATGACGACGATGACGATGAGTCCGTGCTGCTCAACGACAATGATGAGTCCGAGCTGCTCGACGACGACGACGAGTCCGAGCTGCTCGACGACGAACATGACGACGACGATGAGTCCGAGCTGCTCGACGACAAACATGAAGAGAAGTCTTGTTTAGTCCCAACAACAACAACAATGAAGGAAGAGAGGCCAAACTCAGAGCCAGTAGAAGTTCATGGTAATAATGCCTTGCAAAATGACATCCAATGGGGCCATGAGACGGTAAAGAAGTTTCTAACAAAACTTGGATTGCTTTGATTGTCAAAAAAAAAAAAAACTTTTCAGAACCACCAGTGGAAGAAACTTGGTTGAAGTTGATCATGAGTTCTGTGGCTGTTCTGATCCATTTGCCTAAATTTTTATTCGCCTGGGAAAGATGGAAAGGAGCTCGAGGTGTTTCATGGTGATGGCTGTGGATACATGTTTTCTTTTATATACTGTGCTGTTATATTACTTAGATTTGTATTATTCTCATTTTTGGCCACTTTTGTATATACTGGGGGTTTCATGGGTGATAGAAAGAGCTTTGGAATTGTAATATATATTTGTTGTAATAAATTCTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00427	115507	119544	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM20

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0030246 carbohydrate binding

GO:2001070 starch binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000427s00033836.1	PF00686.14	CBM_20	96	181	1.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	88.186
SRR1783600	control	89.368
SRR1783602	moderate drought stress	117.303
SRR1811619	moderate drought stress	116.690

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	98.856
DRR006520	Root Summer glycyrrhizin high producing strain	97.935
DRR006521	Root Winter glycyrrhizin high producing strain	70.511
DRR006522	Root Winter glycyrrhizin high producing strain	68.665
DRR006523	Root Summer glycyrrhizin low producing strain	81.471
DRR006524	Root Summer glycyrrhizin low producing strain	80.931
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.132
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.727

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	29.273
SRR2868004	Drought Stress(Tissue:root)	30.818
SRR2967015	Control (Tissue:root)	25.020

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	33.898
SRR9715740	Leave	41.139
SRR9715741	Leave	33.459
SRR9715739	Root	28.224
SRR9715742	Root	91.396
SRR9715743	Root	82.574

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.556
SRR8749028	MeJA induced 9h	37.782
SRR8749029	MeJA induced 9h	42.194
SRR8749030	Uninduced	10.598
SRR8749031	Uninduced	6.564
SRR8749032	Uninduced	7.949

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	96.143
SRR8400027	Control-Root	112.691