Gene detail information of Glyur000428s00019748.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G65200.16.00E-145plant U-box 38
NRXP_004501958.10PREDICTED: U-box domain-containing protein 38-like [Cicer arietinum]
Swissprottr|Q9FJP6|PUB38_ARATH0U-box domain-containing protein 38
trEMBLtr|A0A072UZS8|A0A072UZS8_MEDTR0Armadillo/beta-catenin repeat protein {ECO:0000313|EMBL:KEH35067.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004289382595435+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000428s00019748.1PF04564.10U-box30983.50E-10
Glyur000428s00019748.1PF00514.18Arm3283672.70E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.131
SRR1783600control19.631
SRR1783602moderate drought stress30.060
SRR1811619moderate drought stress30.181

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.811
DRR006520Root Summer glycyrrhizin high producing strain25.078
DRR006521Root Winter glycyrrhizin high producing strain12.441
DRR006522Root Winter glycyrrhizin high producing strain12.215
DRR006523Root Summer glycyrrhizin low producing strain37.069
DRR006524Root Summer glycyrrhizin low producing strain38.422
DRR006525Leaf Summer glycyrrhizin high producing strain14.606
DRR006526Leaf Summer glycyrrhizin high producing strain14.668

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.906
SRR2868004Drought Stress(Tissue:root)44.572
SRR2967015Control (Tissue:root)63.059

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave48.755
SRR9715740Leave53.783
SRR9715741Leave66.525
SRR9715739Root100.136
SRR9715742Root78.980
SRR9715743Root65.334

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.043
SRR8749028MeJA induced 9h33.454
SRR8749029MeJA induced 9h13.934
SRR8749030Uninduced15.458
SRR8749031Uninduced7.006
SRR8749032Uninduced9.229

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.414
SRR8400027Control-Root32.504

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved