Gene detail information of Glyur000428s00019752.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G10200.17.00E-74GATA type zinc finger transcription factor family protein
NRKHN19331.12.07E-130Pollen-specific protein SF3 [Glycine soja]
Swissprottr|Q94JX5|WLIM1_ARATH7.00E-93LIM domain-containing protein WLIM1 {ECO:0000305}
trEMBLtr|I1KCJ1|I1KCJ1_SOYBN8.00E-131Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G19680.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00428104613107541+


Gene family

Gene familysubfamily
Transcription Factors FamilyLIM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000428s00019752.1PF00412.17LIM11654.00E-13
Glyur000428s00019752.1PF00412.17LIM1101653.80E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.022
SRR1783600control39.521
SRR1783602moderate drought stress30.410
SRR1811619moderate drought stress30.351

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.292
DRR006520Root Summer glycyrrhizin high producing strain32.749
DRR006521Root Winter glycyrrhizin high producing strain212.062
DRR006522Root Winter glycyrrhizin high producing strain205.531
DRR006523Root Summer glycyrrhizin low producing strain23.393
DRR006524Root Summer glycyrrhizin low producing strain24.071
DRR006525Leaf Summer glycyrrhizin high producing strain12.410
DRR006526Leaf Summer glycyrrhizin high producing strain12.383

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.281
SRR2868004Drought Stress(Tissue:root)25.995
SRR2967015Control (Tissue:root)29.145

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.855
SRR9715740Leave6.895
SRR9715741Leave13.060
SRR9715739Root7.236
SRR9715742Root21.180
SRR9715743Root17.516

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.382
SRR8749028MeJA induced 9h27.841
SRR8749029MeJA induced 9h18.399
SRR8749030Uninduced36.645
SRR8749031Uninduced16.213
SRR8749032Uninduced16.456

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.710
SRR8400027Control-Root29.119

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved