Gene detail

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Gene detail information of Glyur000428s00019758.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26730.1	6.00E-55	Leucine-rich repeat protein kinase family protein
NR	XP_003528158.2	0	PREDICTED: probable inactive receptor kinase At2g26730-like [Glycine max]
COG	YP_002433868.1	6.00E-11	hypothetical protein Dalk_4722 [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|O48788\|Y2267_ARATH	1.00E-103	Probable inactive receptor kinase At2g26730 (Precursor)
trEMBL	tr\|I1KCI3\|I1KCI3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G19620.1}

Sequence

Transcript Sequence

>Glyur000428s00019758.1
ATGAGCCTAAACCCCATCTGGGTCTTCCCACTCTTTTTGTTTTTTCTAATGGCCAATTCAGAAGAACAAGCGGTGAGAAAGGCCCTAGTCAAGTTCATGGATAAACTTGCACCACCTGGGAATAACAATAAGACTAACCAAAGAGATGGTTGGAACCTCACATCAGATCCCTGCACTGATAAGTGGCAAGGCGTGACCTGCTATTCAGATAACCACTACGTGAAGAGTATAATTCTTGAAGAGTTGGGTTTCAGTGGTGTTGTGGATGCCACTTCTCTTTGCAAGGCGAAGTCCCTTCAAATCCTAAGCCTCAGTAACAACAACTTGCATGGTTTGATATCAGAGGATATAGCAAACTGCAAGTTCCTNACCCACTTATTCCTAAATGGCAACAAATTCTCTGGCAATCTTCCTGTTTCCATTGCTAAGCTAAGTAACCTGAAGCNGCTTTATGTTTCGGACAACCACTTCACTGGACAGCTTCCTAAGCTGGTTAATGTTTCAGGGTTGATATCCTTTCTTGCTGAGAACAACAACTTCACTGGGGATATTCCTGTGTTTGATTTCTCCAACCTTGATGCCTTTAATGTCTCCAATAATAAATTGTGGGGTCCAGTTCCTGATGTCAGAGGCAGGTTCCATGCAGATAGCTTTTATGGTAATCCTGCTTTATGTGGAAAGCCACTTTCAAACTCATCATGCCCTCCTCCACCTCCACCACTTGTTGCAAAGAAAGTCAAAAACTCATTTCGTGATGATTTGCCCCTNTATTCAGGTTACATAATCCTTGGTTTAATTGTCCTGCTTTTCTTGATCTTCAAATTGTTAAGCAAATTAATCAAGACTAAAGAAAAGGCAGCAGATGCGGAAAAGAAAGACATGGGCATGGCACAAGAAACTAGTGGTGGGGACAGGCCTAGTGAAACTTCCAATTCCAAGGGATCAAAGAATTGGCTGAGTGGCATTGGGATTATTAGATCAGAGTGTAATTCGTTGACTTCTTTGGAGAGTGGGATGATGACTACTACATCAGGTCTTGTTCTTCTCTCAAGTCGCANGCTCAGGGGATTGCAATTTGAGGACTTGTTGAGTGCTCCTGCTGAATTGATTAGGAGAGGAAAGCACGGAAGCCTCTACAAGGTTATGCTCGAAAACGGGGTGATGTTGGCTGTCAAGAGGATCAAGGATTGGGGGATTTCAAAGCAAGAGTTTGAGATAAGGATGAACCTGATAGCTCAAGTGAAGCAGCATCCTTGTGTAATGCCACCTGTTGCATACTATTGCTCCCAGCAAGAGAAGCTCCTGGCGTATGAATATCTGCAGAATGGTAGCCTCTTCATGTTGCTCTATGGATCTCAAAGTGGCCACTCTCTTGACTGGGGGAGCAGACTAAATGTTGCTGCTAAGATGGCTGAGGCTTTGGCATATATGCATGAGGAGCTTGGTGAGAGTGGAATAGCACATGGCAACTTAAAATCAAGTAACATTTTGTTTGACAATAATNTGGAACCACGAATAAGCGAATATGGCCTAATGATGGCTGAAAATCAAGGTGCCAGTTCTCATAACAAAAGGTTCAAAAACAGAAATGTGACTGCAGACCCCTTCAAAGTTGATGTATATGCCTTTGGTGTGATACTTCTCGAGCTGCTGACAGGGAAAGTAGTTAAAAATGATGGATTCGATCTGGTTAAATGGGTGAATTCGGTTGTCAAAGAGGAATGGACNGTCGAAGTTTTTGACAAGTCCCTAATCTCACAAGGTGCTTCTGAAGAGAGGATGGTGAACTTGTTGCAGTTAGCATTAAAGTGCATAAATCCTTCTCCAAGTGATAGNCCATGTATGAGTCAAGTGGCAGTGATCACAAATGCATTGAANGAGGAGGAAGAAGAAAAATCGACATCCTTTGACACATGACCGAAAGTTTAGCCACAGACTTCTACATGTTACTTTTAACTACTCTAATTTTCATTAATTTCAAGCAGATAAGGGTCAGTACCCATTCATGTGAGAATTTAATTAAAATGGCAAAAGATTAGAAGATTGGCTATAATTTCAATTAGCAAGAGTCTCTCTTCTTCACTAGGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00428	146448	148883	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000428s00019758.1	PF08263.7	LRRNT_2	27	67	0.00017
Glyur000428s00019758.1	PF00560.28	LRR_1	98	120	0.77
Glyur000428s00019758.1	PF00560.28	LRR_1	123	144	1.3
Glyur000428s00019758.1	PF00069.20	Pkinase	369	616	2.10E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.297
SRR1783600	control	0.282
SRR1783602	moderate drought stress	1.554
SRR1811619	moderate drought stress	1.515

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.572
DRR006520	Root Summer glycyrrhizin high producing strain	0.567
DRR006521	Root Winter glycyrrhizin high producing strain	0.213
DRR006522	Root Winter glycyrrhizin high producing strain	0.201
DRR006523	Root Summer glycyrrhizin low producing strain	1.323
DRR006524	Root Summer glycyrrhizin low producing strain	1.431
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.668
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.622

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.462
SRR2868004	Drought Stress(Tissue:root)	0.406
SRR2967015	Control (Tissue:root)	1.528

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.060
SRR9715740	Leave	0.182
SRR9715741	Leave	0.159
SRR9715739	Root	0.067
SRR9715742	Root	0.236
SRR9715743	Root	0.305

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.679
SRR8400027	Control-Root	0.771