Gene detail

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Gene detail information of Glyur000429s00022714.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02205.1	5.00E-147	Fatty acid hydroxylase superfamily
NR	XP_009779400.1	0	PREDICTED: protein ECERIFERUM 1-like [Nicotiana sylvestris]
COG	YP_006918135.1	2.00E-06	hypothetical protein M5M_16375 [Simiduia agarivorans SA1 = DSM 21679]
Swissprot	tr\|F4HVY0\|CER1_ARATH	3.00E-167	Protein ECERIFERUM 1
trEMBL	tr\|K7L116\|K7L116_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G12741.1}

Sequence

Transcript Sequence

>Glyur000429s00022714.2
CATTCTTCCATTGTTACTGAACCCATTACTTCTGTGATCCATCCATTTGCAGAACACATAGCCTACTTTCTGCTATTTGCCATTCCGTTATTAACAACAGTGATCACAAGGACAGCATCCATAGCATCCTTCGCAGGTTATCTCGCCTACATTGACTTCATGAACAACATGGGTCACTGCAATTTCGAGTTCATTCCAAAGGCCATCTTCTCCACCTTTCCCTTCCTAAAGTTTCTCATGTATACGCCATCGTTCCACTCACTACATCATACCCAATTTCGGACTAACTACTCACTCTTCATGCCCATGTATGATTACATTTATGGAACTGTGGACAAGACTTCAGACACCACATATGAAACATCGCTGAAGAGAGAAGAAGGGTCACCAGATGTGGTACATTTAACACACCTTACAACCCCTGAATCCATCTATCATCTAAGGTTGGGATTTGCTTCCTTAGCCTCCAAACCCCAATCTTCTACATGGTACCTCTATTTGATGTGGCCATTCACTCTTTGGTCTGTTCTGGTGACATGGTTTTATGGTCAAACATTTGTTCTTGAGAGGAACACTTTCAAAAAGCTCAATTTGCAATCATGGGGAGACTTGCTCAATAAATATGGTGAGCTTTACATCAAAAGCTACCCCCAGCTTAAGATCAGGATTGTTGATGGCAGTAGCTTAGCTGTGGCAACTGTTCTTAACAGTATTCCAAAAGAAACAAGCCAAGTGCTTCTTTGTGGTAGACTTAACAAGGTTTCATATGCCATTGCAAAAGCTTTATGTGAAAGGGGTACCAAGGTTACAACAATGTACAAGGATGAATATGACAATCTTCAATTAAGGCTCTCCACTGAGTCCAAAAAGAATTTGGTTTTCCCTGGATCCTGTACTACGAAGGAGACCAATTTAACGAGGCAGAACAGAAAAAGGCACCAAAAGGATCATTGTTCATACCATTTTCCCAATTCCCTCCAAAGAAACTGCGCAAAGACTGCTTCTACCAATTGGTTGCCAAGAAGAGTCATGAGTGCGTGGCGCATCGCTGGAATATTGCATGCCTTGGAAGGTTGGAACATTCATGAATGTGGGGATGTCATGTTTAGCATTGAGAAAGTGTGGCAAGCAAGTCTTCAGCATGGGTTTAGGCCATTGAAGATTAATTATGCCCTTGCTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00429	109403	157227	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15404	K15404, CER1	EC:4.1.99.5	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000429s00022714.2	PF12076.3	Wax2_C	192	248	3.70E-10
Glyur000429s00022714.2	PF12076.3	Wax2_C	259	332	9.90E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.004
SRR1783600	control	0.004
SRR1783602	moderate drought stress	0.003
SRR1811619	moderate drought stress	0.005

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.006
DRR006520	Root Summer glycyrrhizin high producing strain	0.006
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.005
DRR006524	Root Summer glycyrrhizin low producing strain	0.008
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.656
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.016
SRR2868004	Drought Stress(Tissue:root)	0.008
SRR2967015	Control (Tissue:root)	0.015

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.867
SRR9715740	Leave	2.456
SRR9715741	Leave	2.939
SRR9715739	Root	0.002
SRR9715742	Root	0.175
SRR9715743	Root	0.113

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.007
SRR8400027	Control-Root	0.224