Gene detail information of Glyur000431s00018639.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G11790.13.00E-124arogenate dehydratase 1
NRXP_003596963.10Arogenate dehydratase/prephenate dehydratase [Medicago truncatula]
COGYP_004172970.15.00E-72prephenate dehydratase [Anaerolinea thermophila UNI-1]
Swissprottr|Q9SA96|AROD1_ARATH2.00E-153Arogenate dehydratase/prephenate dehydratase 1, chloroplastic (Precursor)
trEMBLtr|A2Q4I2|A2Q4I2_MEDTR0Prephenate dehydratase with ACT region {ECO:0000313|EMBL:ABN08532.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004317786084553+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05359ADT, PDT EC:4.2.1.91 4.2.1.51 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009094  L-phenylalanine biosynthetic process


molecular_function

GO:0004664  prephenate dehydratase activity

GO:0016597  amino acid binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000431s00018639.1PF00800.13PDT902661.60E-45
Glyur000431s00018639.1PF01842.20ACT2783150.00022


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.598
SRR1783600control12.494
SRR1783602moderate drought stress14.876
SRR1811619moderate drought stress14.922

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.387
DRR006520Root Summer glycyrrhizin high producing strain12.152
DRR006521Root Winter glycyrrhizin high producing strain11.275
DRR006522Root Winter glycyrrhizin high producing strain10.999
DRR006523Root Summer glycyrrhizin low producing strain13.487
DRR006524Root Summer glycyrrhizin low producing strain13.210
DRR006525Leaf Summer glycyrrhizin high producing strain9.967
DRR006526Leaf Summer glycyrrhizin high producing strain10.051

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.631
SRR2868004Drought Stress(Tissue:root)17.357
SRR2967015Control (Tissue:root)18.250

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.672
SRR9715740Leave25.623
SRR9715741Leave27.376
SRR9715739Root7.975
SRR9715742Root10.409
SRR9715743Root11.176

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.123
SRR8749028MeJA induced 9h9.233
SRR8749029MeJA induced 9h7.782
SRR8749030Uninduced6.875
SRR8749031Uninduced3.733
SRR8749032Uninduced4.298

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.333
SRR8400027Control-Root17.422

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved