Gene detail information of Glyur000431s00018652.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32540.1 | 8.00E-112 | cellulose synthase-like B4 |
| NR | KHN44861.1 | 0 | Cellulose synthase-like protein B3 [Glycine soja] |
| Swissprot | tr|Q339N5|CSLH1_ORYSJ | 6.00E-134 | Cellulose synthase-like protein H1 |
| trEMBL | tr|I1LU36|I1LU36_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G31830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00431 | 141903 | 152628 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000431s00018652.1 | PF03552.9 | Cellulose_synt | 77 | 209 | 4.30E-44 |
| Glyur000431s00018652.1 | PF03552.9 | Cellulose_synt | 215 | 304 | 3.30E-17 |
| Glyur000431s00018652.1 | PF03552.9 | Cellulose_synt | 702 | 920 | 1.70E-48 |
| Glyur000431s00018652.1 | PF03552.9 | Cellulose_synt | 922 | 1054 | 4.00E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.928 |
| SRR1783600 | control | 3.044 |
| SRR1783602 | moderate drought stress | 5.131 |
| SRR1811619 | moderate drought stress | 5.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.712 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.138 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.782 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.860 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.252 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.067 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 58.033 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 57.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.639 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.010 |
| SRR2967015 | Control (Tissue:root) | 14.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.705 |
| SRR9715740 | Leave | 31.260 |
| SRR9715741 | Leave | 35.162 |
| SRR9715739 | Root | 1.805 |
| SRR9715742 | Root | 3.188 |
| SRR9715743 | Root | 2.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.820 |
| SRR8749028 | MeJA induced 9h | 1.990 |
| SRR8749029 | MeJA induced 9h | 0.515 |
| SRR8749030 | Uninduced | 0.818 |
| SRR8749031 | Uninduced | 0.209 |
| SRR8749032 | Uninduced | 0.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.474 |
| SRR8400027 | Control-Root | 4.902 |