Gene detail information of Glyur000431s00018653.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G32540.13.00E-47cellulose synthase-like B4
NRXP_007149989.11.94E-107hypothetical protein PHAVU_005G116500g [Phaseolus vulgaris]
COGYP_007129238.19.00E-06glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428]
Swissprottr|Q8RX83|CSLB3_ARATH6.00E-53Cellulose synthase-like protein B3
trEMBLtr|V7BY44|V7BY44_PHAVU7.00E-108Uncharacterized protein {ECO:0000313|EMBL:ESW21983.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00431156229165712-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0030244  cellulose biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0016760  cellulose synthase (UDP-forming) activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000431s00018653.1PF03552.9Cellulose_synt2012725.80E-29
Glyur000431s00018653.1PF03552.9Cellulose_synt2874492.10E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.013
SRR1783600control0.019
SRR1783602moderate drought stress0.037
SRR1811619moderate drought stress0.058

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.324
DRR006520Root Summer glycyrrhizin high producing strain0.271
DRR006521Root Winter glycyrrhizin high producing strain0.059
DRR006522Root Winter glycyrrhizin high producing strain0.055
DRR006523Root Summer glycyrrhizin low producing strain0.055
DRR006524Root Summer glycyrrhizin low producing strain0.055
DRR006525Leaf Summer glycyrrhizin high producing strain14.950
DRR006526Leaf Summer glycyrrhizin high producing strain15.161

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.218
SRR2868004Drought Stress(Tissue:root)0.097
SRR2967015Control (Tissue:root)0.161

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.135
SRR9715740Leave19.172
SRR9715741Leave33.433
SRR9715739Root0.181
SRR9715742Root0.125
SRR9715743Root0.085

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h1.544
SRR8749029MeJA induced 9h0.073
SRR8749030Uninduced4.148
SRR8749031Uninduced0.430
SRR8749032Uninduced2.178

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.891
SRR8400027Control-Root0.871

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved